Gene detail

Detailed information of evm.model.Ap10.1562 in Astrangia poculata

Genomic Location: Ap10:15431304...15446938
NR annotation: XP_020600445.1, uncharacterized protein LOC110039652 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.1562

atgcgtcatctttctgtttggtccctagccacgttatgcagtcctccatgtttgctggtatcaaacacaacggacattttagccatggactaccaaactgaagcagttcgttccattatttctgggttaacgagagctgttgccatagacgttcatttcgccttgcgttacattttttggagtgatgtaacagaacgaaacatcaaacgtttccgcattgatgacaacacgacaacaattattacagggattggggtttgtgaaggattggcagtggattggaggtcatcacagctgtactggactgatacaacatatgatatcatatcaatatcagacctagatggcaataaccaacgaactttggtttcctcgggacttgatgaacctagaggaatagctctagatcttgacagcaggttgatgttctggactgactcgggagccaagaaagcaattgaaagagcttcattggatggaaatgagagagtctccattgtgacaacaagtctgcatttgcccagtggtattgagcttgacaaaggaaacaaacgtatattttgggtggatgaggcattggacagagtggaatccgtcgattacaatggcaacaacaggaagctactttttcagcaaagcggtttacacccgtttggagtgacgctgattcaacctttcttgttttttacagtttggaatacgtctaaggagatttatttacttgatattgccactaaaagactgctgtaccgttaccgcattacaggcggagaacctatgcgcatcgtagcatacgactacgcccgacaacctccagcttcgagtccttgtgctgtaaataatggaggatgtagtcatttttgtgtagcgaagacttctggttacgaatgtgtgtgtccatttggagtatttgtgaagcaatataacaagacctgcaaaagaggagtgatgcgctgtccccagttatctgcaccttccaacggaagcatgcaggcgtgttccaatttgccaggtgaaacctgtcagttttcctgtgacaaagggtactttcagtttggatcaagaagtcgaacatgtaacagcaatggaaaatggactggaagaaaaacttattgtcttgggcggaaaattactcatgcacgcaaggattcagctgtggtagctaacacaaacaagagaaatacgcgaaagagaaaacaagttataggcattgcagcaggactatctgtatttattttactgacaggtgtcgccatcttttgccagcggaaaggctatctaaagcggtgttacatgacagaggaaactttgagacatatcactccgacatttgaagttacagccagcattgaaaacaacgaaccagtatatgtagatatgaaggaattaccgaagtccaagtctgccagtgaacaaaatcaagatttacctaactgcagcaacgaagctcaacgcaaccaactgccgacatcgtttgtaaaatacatcacacgagcagaggacacattcagcagtgctggtggagtgctgtgcgctgctttagactctgacgtcagcatcatcgttgatagcgatacaattcccgttggaattgagcagcctatcttcttcggtgtgatctacaatgaaacagctatattgcgggatgtccctaaaacccccgatgagacgcttatatcccctgtgattgaatgtggacctcacgacattgaacttttaaagccagtcaaaattatcacgccacattgcctggatttggttgaggctaaaaaggaatggataactgtttacagatgtgggcagttacctgacaacgaaaatggtctttgcagctgggagaaagtgccaaatgaatgggagaaaagcagtcagtctaaagcctggttcacggtgaaaaaggactccattcacataaaaaccaagactttctctctctggagcgtatttgcctgtggcgggccaaagaggaaaagagcgacggtttttgctagcaaaccagatcccaaaagcgatctcatctacttacgcttttacgtctacaatgacaacgaagattctaagaggcgggtggagttgaaagatagagagcggtttcctgattcgaagccagcgagggagaagccctttagaatgtacgatgacaacaaagaaataacagtgaaactcaccaatcttgaagaaggctggaaaacggacaagatgcctgatacacagatatacatctacgagaaagtcaaggggaatggattccgctccaaggacgcctgcgattttgatgtaaaaccagaggaaggtcgagatgtgaacggattttcttgtataataaagtttcaacaggaagatcacccccaagaatacttaatttatctaaatccgggttttacgcctctgaagcgtcagaacatccgtaaaagctctgcagaaggatgtcgaagcgacgcaggatcgagtggcattggtacgagaaatggaagttcgtcctcggcagcggcagaattggaagacgaggactatgatagcgacagtcaagaaggaaacacatctccaggttcttcaagcgggcaaaccttacactgcggtcaccaattctcgtcattaggtagagacgaagagccggtaacagaaagacactgccaatgcatcagcccatatgttggattcaagtggaagaaacttttgcgaaaactttccatgtccgagacagccattaaaaatttggaagagaactacaaaaactatgaggttgaggaaaagtgctaccaagggcttttgacatggatggaaaaatatgggccccagagagcaactactaaaacactgtgtgatgctctgagccacgtgggttgcccagaagcgctggaagcgctgtggaaagaagttacgtcacctcaaagtgactgttacactcaaaagcctggaagtggaatgcagaattccactccaactgacagttaa

Transcript

evm.model.Ap10.1562

ATGCGTCATCTTTCTGTTTGGTCCCTAGCCACGTTATGCAGTCCTCCATGTTTGCTGGTATCAAACACAACGGACATTTTAGCCATGGACTACCAAACTGAAGCAGTTCGTTCCATTATTTCTGGGTTAACGAGAGCTGTTGCCATAGACGTTCATTTCGCCTTGCGTTACATTTTTTGGAGTGATGTAACAGAACGAAACATCAAACGTTTCCGCATTGATGACAACACGACAACAATTATTACAGGGATTGGGGTTTGTGAAGGATTGGCAGTGGATTGGAGGTCATCACAGCTGTACTGGACTGATACAACATATGATATCATATCAATATCAGACCTAGATGGCAATAACCAACGAACTTTGGTTTCCTCGGGACTTGATGAACCTAGAGGAATAGCTCTAGATCTTGACAGCAGGTTGATGTTCTGGACTGACTCGGGAGCCAAGAAAGCAATTGAAAGAGCTTCATTGGATGGAAATGAGAGAGTCTCCATTGTGACAACAAGTCTGCATTTGCCCAGTGGTATTGAGCTTGACAAAGGAAACAAACGTATATTTTGGGTGGATGAGGCATTGGACAGAGTGGAATCCGTCGATTACAATGGCAACAACAGGAAGCTACTTTTTCAGCAAAGCGGTTTACACCCGTTTGGAGTGACGCTGATTCAACCTTTCTTGTTTTTTACAGTTTGGAATACGTCTAAGGAGATTTATTTACTTGATATTGCCACTAAAAGACTGCTGTACCGTTACCGCATTACAGGCGGAGAACCTATGCGCATCGTAGCATACGACTACGCCCGACAACCTCCAGCTTCGAGTCCTTGTGCTGTAAATAATGGAGGATGTAGTCATTTTTGTGTAGCGAAGACTTCTGGTTACGAATGTGTGTGTCCATTTGGAGTATTTGTGAAGCAATATAACAAGACCTGCAAAAGAGGAGTGATGCGCTGTCCCCAGTTATCTGCACCTTCCAACGGAAGCATGCAGGCGTGTTCCAATTTGCCAGGTGAAACCTGTCAGTTTTCCTGTGACAAAGGGTACTTTCAGTTTGGATCAAGAAGTCGAACATGTAACAGCAATGGAAAATGGACTGGAAGAAAAACTTATTGTCTTGGGCGGAAAATTACTCATGCACGCAAGGATTCAGCTGTGGTAGCTAACACAAACAAGAGAAATACGCGAAAGAGAAAACAAGTTATAGGCATTGCAGCAGGACTATCTGTATTTATTTTACTGACAGGTGTCGCCATCTTTTGCCAGCGGAAAGGCTATCTAAAGCGGTGTTACATGACAGAGGAAACTTTGAGACATATCACTCCGACATTTGAAGTTACAGCCAGCATTGAAAACAACGAACCAGTATATGTAGATATGAAGGAATTACCGAAGTCCAAGTCTGCCAGTGAACAAAATCAAGATTTACCTAACTGCAGCAACGAAGCTCAACGCAACCAACTGCCGACATCGTTTGTAAAATACATCACACGAGCAGAGGACACATTCAGCAGTGCTGGTGGAGTGCTGTGCGCTGCTTTAGACTCTGACGTCAGCATCATCGTTGATAGCGATACAATTCCCGTTGGAATTGAGCAGCCTATCTTCTTCGGTGTGATCTACAATGAAACAGCTATATTGCGGGATGTCCCTAAAACCCCCGATGAGACGCTTATATCCCCTGTGATTGAATGTGGACCTCACGACATTGAACTTTTAAAGCCAGTCAAAATTATCACGCCACATTGCCTGGATTTGGTTGAGGCTAAAAAGGAATGGATAACTGTTTACAGATGTGGGCAGTTACCTGACAACGAAAATGGTCTTTGCAGCTGGGAGAAAGTGCCAAATGAATGGGAGAAAAGCAGTCAGTCTAAAGCCTGGTTCACGGTGAAAAAGGACTCCATTCACATAAAAACCAAGACTTTCTCTCTCTGGAGCGTATTTGCCTGTGGCGGGCCAAAGAGGAAAAGAGCGACGGTTTTTGCTAGCAAACCAGATCCCAAAAGCGATCTCATCTACTTACGCTTTTACGTCTACAATGACAACGAAGATTCTAAGAGGCGGGTGGAGTTGAAAGATAGAGAGCGGTTTCCTGATTCGAAGCCAGCGAGGGAGAAGCCCTTTAGAATGTACGATGACAACAAAGAAATAACAGTGAAACTCACCAATCTTGAAGAAGGCTGGAAAACGGACAAGATGCCTGATACACAGATATACATCTACGAGAAAGTCAAGGGGAATGGATTCCGCTCCAAGGACGCCTGCGATTTTGATGTAAAACCAGAGGAAGGTCGAGATGTGAACGGATTTTCTTGTATAATAAAGTTTCAACAGGAAGATCACCCCCAAGAATACTTAATTTATCTAAATCCGGGTTTTACGCCTCTGAAGCGTCAGAACATCCGTAAAAGCTCTGCAGAAGGATGTCGAAGCGACGCAGGATCGAGTGGCATTGGTACGAGAAATGGAAGTTCGTCCTCGGCAGCGGCAGAATTGGAAGACGAGGACTATGATAGCGACAGTCAAGAAGGAAACACATCTCCAGGTTCTTCAAGCGGGCAAACCTTACACTGCGGTCACCAATTCTCGTCATTAGGTAGAGACGAAGAGCCGGTAACAGAAAGACACTGCCAATGCATCAGCCCATATGTTGGATTCAAGTGGAAGAAACTTTTGCGAAAACTTTCCATGTCCGAGACAGCCATTAAAAATTTGGAAGAGAACTACAAAAACTATGAGGTTGAGGAAAAGTGCTACCAAGGGCTTTTGACATGGATGGAAAAATATGGGCCCCAGAGAGCAACTACTAAAACACTGTGTGATGCTCTGAGCCACGTGGGTTGCCCAGAAGCGCTGGAAGCGCTGTGGAAAGAAGTTACGTCACCTCAAAGTGACTGTTACACTCAAAAGCCTGGAAGTGGAATGCAGAATTCCACTCCAACTGACAGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88572	Low-density lipoprotein receptor-related protein 6 OS=Mus musculus OX=10090 GN=Lrp6 PE=1 SV=1
O75581	Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens OX=9606 GN=LRP6 PE=1 SV=2
Q8VI56	Low-density lipoprotein receptor-related protein 4 OS=Mus musculus OX=10090 GN=Lrp4 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001790 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14670 all species →	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF00791 all species →	ZU5	ZU5 domain	Family	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR050778 all species →	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR000906 all species →	Domain	ZU5 domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513 all species →	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap10.1562.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.