Detailed information of evm.model.Ap10.1563 in Astrangia poculata

Genomic Location: Ap10:15449825...15452035
NR annotation: XP_020632902.1, low-density lipoprotein receptor-related protein 4-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q04833Low-density lipoprotein receptor-related protein OS=Caenorhabditis elegans OX=6239 GN=lrp-1 PE=1 SV=1
P98164Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens OX=9606 GN=LRP2 PE=1 SV=3
P07522Pro-epidermal growth factor OS=Rattus norvegicus OX=10116 GN=Egf PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000594 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00058
all species →		Ldl_recept_bLow-density lipoprotein receptor repeat class BRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000033
all species →		RepeatLDLR class B repeatInterproscan
IPR050778
all species →		FamilyCueball/EGF/LRP/NidogenInterproscan
IPR011042
all species →		Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46513
all species →		VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap10.1563. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap10.1563.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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