Genomic Location: Ap10:16876782...16918494
NR annotation: XP_020606089.1, uncharacterized protein LOC110044851 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap10.1691 |
| Transcript |
| evm.model.Ap10.1691 |
| Protein |
| evm.model.Ap10.1691 |
| UniProt accession | Description |
|---|---|
| M9NDE3 | Protein bark beetle OS=Drosophila melanogaster OX=7227 GN=bark PE=1 SV=1 |
| Q5DRF0 | Protocadherin alpha-2 OS=Pan troglodytes OX=9598 GN=PCDHA2 PE=3 SV=1 |
| Q9Y5H9 | Protocadherin alpha-2 OS=Homo sapiens OX=9606 GN=PCDHA2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000535 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00530 all species → | SRCR | Scavenger receptor cysteine-rich domain | Domain | Interproscan |
| PF00028 all species → | Cadherin | Cadherin domain | Domain | Interproscan |
| PF13229 all species → | Beta_helix | Right handed beta helix region | Repeat | Interproscan |
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012334 all species → | Homologous_superfamily | Pectin lyase fold | Interproscan |
| IPR001190 all species → | Domain | SRCR domain | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR002126 all species → | Domain | Cadherin-like | Interproscan |
| IPR011050 all species → | Homologous_superfamily | Pectin lyase fold/virulence factor | Interproscan |
| IPR036772 all species → | Homologous_superfamily | SRCR-like domain superfamily | Interproscan |
| IPR015919 all species → | Homologous_superfamily | Cadherin-like superfamily | Interproscan |
| IPR016187 all species → | Homologous_superfamily | C-type lectin fold | Interproscan |
| IPR000998 all species → | Domain | MAM domain | Interproscan |
| IPR053243 all species → | Family | Septate junction maturation regulator | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR017448 all species → | Domain | SRCR-like domain | Interproscan |
| IPR039448 all species → | Domain | Right handed beta helix domain | Interproscan |
| IPR006626 all species → | Repeat | Parallel beta-helix repeat | Interproscan |
| IPR001846 all species → | Domain | von Willebrand factor, type D domain | Interproscan |
| IPR020894 all species → | Conserved_site | Cadherin conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47653 all species → | PROTEIN BARK BEETLE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0007156 all species → | Biological Process | homophilic cell adhesion via plasma membrane adhesion molecules | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0007155 all species → | Biological Process | cell adhesion | Interproscan |
evm.model.Ap10.1691.
