Genomic Location: Ap10:17260435...17266154
NR annotation: XP_020603798.1, low-density lipoprotein receptor-related protein 6-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap10.1715 |
| Transcript |
| evm.model.Ap10.1715 |
| Protein |
| evm.model.Ap10.1715 |
| UniProt accession | Description |
|---|---|
| P16109 | P-selectin OS=Homo sapiens OX=9606 GN=SELP PE=1 SV=4 |
| P98109 | P-selectin OS=Ovis aries OX=9940 GN=SELP PE=2 SV=1 |
| Q95LG1 | E-selectin OS=Equus caballus OX=9796 GN=SELE PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000594 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00084 all species → | Sushi | Sushi repeat (SCR repeat) | Domain | Interproscan |
| PF00058 all species → | Ldl_recept_b | Low-density lipoprotein receptor repeat class B | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000033 all species → | Repeat | LDLR class B repeat | Interproscan |
| IPR011042 all species → | Homologous_superfamily | Six-bladed beta-propeller, TolB-like | Interproscan |
| IPR035976 all species → | Homologous_superfamily | Sushi/SCR/CCP superfamily | Interproscan |
| IPR050778 all species → | Family | Cueball/EGF/LRP/Nidogen | Interproscan |
| IPR000436 all species → | Domain | Sushi/SCR/CCP domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46513 all species → | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0017147 all species → | Molecular Function | Wnt-protein binding | Interproscan |
| GO:0042813 all species → | Molecular Function | Wnt receptor activity | Interproscan |
| GO:0060070 all species → | Biological Process | canonical Wnt signaling pathway | Interproscan |
evm.model.Ap10.1715.Transcript abundance of evm.model.Ap10.1715 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
