Gene detail

Detailed information of evm.model.Ap10.1724 in Astrangia poculata

Genomic Location: Ap10:17388019...17400240
NR annotation: XP_022793553.1, E-selectin-like isoform X1 [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.1724

atgaaatgtggcatctgtgagtctccactgtttataaatcaaacgctcctttcaccgcttttactgtatctaccgcagcaatataaaagctaccccgtgatcagccgtcacggtggaggtttggacgtcccgtgcaactctccgtgtcttttggtctcaacccgaacggaaatagtagctttggattacaacaacgctacaagttatccgattatctcgaatttatcaagagctgtcgccatagacatccatttcagcctgggctacatcttttggagtgactacaaagaaaagaacattaagcgagctaacatcgacggaacaaatgtcacggtactccacaatgatatattaaattgtttcgggctggcagtagaatgggggtcatctcaattgtactggactgatgaagtcagagatacgatatccgtatcagacttagagggaaataacacacacattctgatttcttcaagtctcgatcagccaaagggaattgctcttgatcctaacaacggattaatgttctggacggacgatggacaaactccaaagatagagagagccacgttactaggcacccaacgcgttaccatagttacgtctaatcttgtttgggtatttggcattgaccttgacagacgaaaacgacttgtgttttgggttgattggctgctgaacagagtagagtccgttgattaccatggcagcaagaggaagttacttttttatgaaatatattctaacttcatcttttttggagtgactttcttgtcttcttgtttattcgtctctgattggggtgctgaagcagtttacaaattcaacgccaccagtgccaatggaacagttgtgagtaatgttaagatcagtccgttcattgatggcctggtagcttatgacagttcccgacagttaccagtcatcaagtgtccagcgttacctgcaccgtccagtggaacaagacttggatgcccagggaatacaacaatgtattatgatacagtctgtcagttctcgtgtaataatggctatatagggtctggttctcaagtaagaagatgtcaacgcaatggtacttggagtggacaagatttcacttgccaaattatcaattgcacgccgctgacagtagatccaagcggtccactgcgcatgagcagttgtgataatcattatggctcaaaatgtaacttttcttgtacgattggttatcgtttaaatggcttgtcaacagttacgtgcgttgcccctggtaaccaacatccgggagtgtggaacaacacaatacccacatgtgaagtgatcacgtgtccagcgttacgtgcaccgtccgatggaacaagacttgtttgcccagggaatgcaacaatgtattataatacaacctgccagttctcgtgtaataatggctatagagggtctggttctcaagtgagaagatgtcaacacaatggaacttggagtggacaagattttacttgccaaattatcaactgtacatcactgagggtagatcccgcaggtccactgcgcatgagcagttgtgataatcaatacggctcaaagtgtaacttttcttgtacgattggtcatcgtttgaatggctcgtcaacagtcacgtgcgttgcccctggtaaccaacatcctggagtgtggaacaacaaaatacccacgtgtgaaggcaactcttctaccgccacccaaactcctccaacagcatcattaaaggaaacagaaggattcaaacaaacgagtaaaataattatagcagcttgtgtgtgtggcattttattgctgtttatcgtcatcgttgctgttgcgtgggcttgcaagagacgtaacaggtgcctctgttcctgttgctttgccgataaaccgaagttgagcagtgactcgctccgtttcagggcgacaacaacgtcggtcacaataacccagtatttgttggagatcaaaggagatcttcgcaacacgaggagacagaggagggccaagctgagggccaggaacaacaagaaaccggagagggtaaacgaacgtgcttttagatatgtatataagtacaagaacatcccatacgatagcctgcaaaattggatcgatggcagagaatataatgaaatactggagatcatactgcacacttatgaaaattctggagttgctggtctcaacaacagccattaccaagaattagatactgcaaatgggagatcaaatgctctttatgcaggacgtaacagttcagacccttcccttctcagcaacagccattaccaggaactaaatactgcaaatgggacattgaattctctctatgcaggacttaagtattcagatcattcctacgaaaattcagtcgctcagtcaagggtgtaa

Transcript

evm.model.Ap10.1724

ATGAAATGTGGCATCTGTGAGTCTCCACTGTTTATAAATCAAACGCTCCTTTCACCGCTTTTACTGTATCTACCGCAGCAATATAAAAGCTACCCCGTGATCAGCCGTCACGGTGGAGGTTTGGACGTCCCGTGCAACTCTCCGTGTCTTTTGGTCTCAACCCGAACGGAAATAGTAGCTTTGGATTACAACAACGCTACAAGTTATCCGATTATCTCGAATTTATCAAGAGCTGTCGCCATAGACATCCATTTCAGCCTGGGCTACATCTTTTGGAGTGACTACAAAGAAAAGAACATTAAGCGAGCTAACATCGACGGAACAAATGTCACGGTACTCCACAATGATATATTAAATTGTTTCGGGCTGGCAGTAGAATGGGGGTCATCTCAATTGTACTGGACTGATGAAGTCAGAGATACGATATCCGTATCAGACTTAGAGGGAAATAACACACACATTCTGATTTCTTCAAGTCTCGATCAGCCAAAGGGAATTGCTCTTGATCCTAACAACGGATTAATGTTCTGGACGGACGATGGACAAACTCCAAAGATAGAGAGAGCCACGTTACTAGGCACCCAACGCGTTACCATAGTTACGTCTAATCTTGTTTGGGTATTTGGCATTGACCTTGACAGACGAAAACGACTTGTGTTTTGGGTTGATTGGCTGCTGAACAGAGTAGAGTCCGTTGATTACCATGGCAGCAAGAGGAAGTTACTTTTTTATGAAATATATTCTAACTTCATCTTTTTTGGAGTGACTTTCTTGTCTTCTTGTTTATTCGTCTCTGATTGGGGTGCTGAAGCAGTTTACAAATTCAACGCCACCAGTGCCAATGGAACAGTTGTGAGTAATGTTAAGATCAGTCCGTTCATTGATGGCCTGGTAGCTTATGACAGTTCCCGACAGTTACCAGTCATCAAGTGTCCAGCGTTACCTGCACCGTCCAGTGGAACAAGACTTGGATGCCCAGGGAATACAACAATGTATTATGATACAGTCTGTCAGTTCTCGTGTAATAATGGCTATATAGGGTCTGGTTCTCAAGTAAGAAGATGTCAACGCAATGGTACTTGGAGTGGACAAGATTTCACTTGCCAAATTATCAATTGCACGCCGCTGACAGTAGATCCAAGCGGTCCACTGCGCATGAGCAGTTGTGATAATCATTATGGCTCAAAATGTAACTTTTCTTGTACGATTGGTTATCGTTTAAATGGCTTGTCAACAGTTACGTGCGTTGCCCCTGGTAACCAACATCCGGGAGTGTGGAACAACACAATACCCACATGTGAAGTGATCACGTGTCCAGCGTTACGTGCACCGTCCGATGGAACAAGACTTGTTTGCCCAGGGAATGCAACAATGTATTATAATACAACCTGCCAGTTCTCGTGTAATAATGGCTATAGAGGGTCTGGTTCTCAAGTGAGAAGATGTCAACACAATGGAACTTGGAGTGGACAAGATTTTACTTGCCAAATTATCAACTGTACATCACTGAGGGTAGATCCCGCAGGTCCACTGCGCATGAGCAGTTGTGATAATCAATACGGCTCAAAGTGTAACTTTTCTTGTACGATTGGTCATCGTTTGAATGGCTCGTCAACAGTCACGTGCGTTGCCCCTGGTAACCAACATCCTGGAGTGTGGAACAACAAAATACCCACGTGTGAAGGCAACTCTTCTACCGCCACCCAAACTCCTCCAACAGCATCATTAAAGGAAACAGAAGGATTCAAACAAACGAGTAAAATAATTATAGCAGCTTGTGTGTGTGGCATTTTATTGCTGTTTATCGTCATCGTTGCTGTTGCGTGGGCTTGCAAGAGACGTAACAGGTGCCTCTGTTCCTGTTGCTTTGCCGATAAACCGAAGTTGAGCAGTGACTCGCTCCGTTTCAGGGCGACAACAACGTCGGTCACAATAACCCAGTATTTGTTGGAGATCAAAGGAGATCTTCGCAACACGAGGAGACAGAGGAGGGCCAAGCTGAGGGCCAGGAACAACAAGAAACCGGAGAGGGTAAACGAACGTGCTTTTAGATATGTATATAAGTACAAGAACATCCCATACGATAGCCTGCAAAATTGGATCGATGGCAGAGAATATAATGAAATACTGGAGATCATACTGCACACTTATGAAAATTCTGGAGTTGCTGGTCTCAACAACAGCCATTACCAAGAATTAGATACTGCAAATGGGAGATCAAATGCTCTTTATGCAGGACGTAACAGTTCAGACCCTTCCCTTCTCAGCAACAGCCATTACCAGGAACTAAATACTGCAAATGGGACATTGAATTCTCTCTATGCAGGACTTAAGTATTCAGATCATTCCTACGAAAATTCAGTCGCTCAGTCAAGGGTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P42201	P-selectin OS=Bos taurus OX=9913 GN=SELP PE=2 SV=1
Q91ZX7	Prolow-density lipoprotein receptor-related protein 1 OS=Mus musculus OX=10090 GN=Lrp1 PE=1 SV=1
G3V928	Prolow-density lipoprotein receptor-related protein 1 OS=Rattus norvegicus OX=10116 GN=Lrp1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000594 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR050778 all species →	Family	Cueball/EGF/LRP/Nidogen	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513 all species →	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.Ap10.1724. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap10.1724.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.