Genomic Location: Ap10:17619807...17625026
NR annotation: XP_020603866.1, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap10.1746 |
| Transcript |
| evm.model.Ap10.1746 |
| Protein |
| evm.model.Ap10.1746 |
| UniProt accession | Description |
|---|---|
| Q10184 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC3F10.09 PE=3 SV=1 |
| Q6C2U0 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=HIS6 PE=3 SV=1 |
| Q7RXQ8 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=his-7 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0013199 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00977 all species → | His_biosynth | Histidine biosynthesis protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR044524 all species → | Family | Histidine biosynthesis, HisA-like | Interproscan |
| IPR013785 all species → | Homologous_superfamily | Aldolase-type TIM barrel | Interproscan |
| IPR011060 all species → | Homologous_superfamily | Ribulose-phosphate binding barrel | Interproscan |
| IPR006062 all species → | Family | Histidine biosynthesis protein | Interproscan |
| IPR011858 all species → | Family | His6-like, eukaryotic-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43090 all species → | 1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] IMIDAZOLE-4-CARBOXAMIDE ISOMERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000105 all species → | Biological Process | L-histidine biosynthetic process | Interproscan |
| GO:0000162 all species → | Biological Process | tryptophan biosynthetic process | Interproscan |
| GO:0003949 all species → | Molecular Function | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01814 | hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | EC:5.3.1.16 | Histidine metabolism | ko00340 | deepkoala |
Transcript abundance of evm.model.Ap10.1746 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
