Gene detail

Detailed information of evm.model.Ap10.1858 in Astrangia poculata

Genomic Location: Ap10:18754967...18784055
NR annotation: XP_027049103.1, WASH complex subunit 4-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.1858

atggaggaaggatggcacttggacgcatttgatgacggttctctaaaaatcgtcggggaagcacaattgaggaaatatggacagtttttggaggaatatgcgtcccagttaaaagctatcgaggatgcgctggacgattctgttggagattcctgggattttactcttgatcccattgctctgcagacattgccatatgagcagtccaggctgctggaactcatcaagacagacaacaaggtttttaacaaagtggtcatggtgtttgcttccttatgccgagaaatggaccagctgaaacatgaggccactacaaagttctacactcctctgttactttatgaagaagctggaggagatgataaagaccaagcccaagagggagacaatcaagtacatctcgggaggatgttacctttactacaagatgtttctagttttgtgacgcgctcttatgaagttgtcaagaatgtggtgcaacagttagcttcagtatattcaagagacggccctaaggtcatggatgtgacaggagttcattttacgactgtttttgaacatcttgctggcctcatgggggttctgattactttggatgagatcattgatgccagtcacacgctaaaagaacactggaaacagtacagaagaatgatcaaatcagtttaccacaacactgctatgtttggtgttgaagaagcaaaacttcgcccacttgaaaaactcttgatgagcttggaaggacagcttcttgatggtgttattttgcagaactgtatagagcagccatttgaaagtcagtatgtgagagtggccagaaataatgaatttgccgaggaattcctctataacatcaggatcatctttcaaagtcttgacacaagaatgagtgaacctcatgaagttgatcagagacagaaactcgttggccttcttgggttgtttatcctacactttcaactttatagagggattgataaaaagttcttcagcaagttgtgggatatccacaaaaaagtaccttctgtccatctggctggagacatcatgttttttccaaatgagtttctcctccgaagaattcctcacctgaacaagattgttgacaagaaacagaaggttgctgtggaaacctccaaggaacagtacttgacgaactgcaatcaaaacttggtcagggattctcagctttaccagatgcaagtcagttcgtggatggtccacatggagtcagctctgagtaagggaggatctttggtggatgatctcaatgcacgctgtgttctgttcattaagggtgttcttattgcacacaccgtgagtcatttggtgcgtactgtcatgaacatgcatctggtgctgtccaaaccactgaccaagactgccgttttggctctgtgcaggctcacagaacttctgaaggccattgagcacacgtttcacaggcgcagtatgcttatagcagaaagtgttaatcacatgatccagcatttgacgtttatggcgttagcttgtattgatactgctaagaagcgcattgcagcagacaagaagtatacagacaaacgacttgatgttttggcagcacttgttttggtgcagaatgctctcaatggcccagcaacaaaggaacgcaggctcgtcaccatgttaggcctccatgtaggaacacagataaaatgcttcagagatgacgagatggcgagtttaagcagtgtgatgaaacgaataaacctcatcagtgatttaagagcaagggtcaagaaagcttgtgattgtggctttcttcactggcacagggttgtgtttccaatttatttggatgatctttatgagaacgtaacggacgttcatcgaattcattacatgattgccgcactaggagactgtgttccagtccttcagcaagtgaagcacgagccgtcagcccaggtcatgctggagctgttcgagaaagaaattggtgacacgctacatgaacacttgcttcaaccattgtgtcgtgacattgaaacagatctacgacttcacattcatcagcatctacagttagatgacagaaatcctttcaaggttgggctaagagatctctcccaatttttgaaaataagaccaatcagatttttccatcagttcgttaacatcaaacaacatgtgactcattacctggacacgacgttctataacttgaccacagtagctcttcatgactggaggacgtacggtgagatgagaaaccaagcgagccagaaatacggcctggaaatgactgaagctcatctgccaagtcagacacttgaacagggtctggacgtgttggagatcatgcggaacattcatgtgttcgtttctcgatatttgtacaaccttaacaatcagattttcgttgaactggcgtccaacaacaaacatttgaacacgatcaacatccgtcacattgccaactccatcagaacacacggctctggaatcatgaacacaacagtgaacttcacctatcagttcctgcgcaagaaattcttcatcttttcacagttcttgtacgatgaacacatcaaggcaagactcattaaggatattcgtttcttcaaagaaaccaaggagcaatcagatcagaaatacccgtttgaacgagcagagaagtttaacaaaggaatccgtaagctcggtttgactcccgatggacacacatacttggatcagtttagggtgctgatcagtcagataggaaacgccatgggctatattcgtatgattcgctctggaggacttcattgctgcagtaacgctatcagattcgttcctgatcttgaagacattgtgtcctttgaggagcttgtaacagaagagaatttgtcagaagagtcaacacaggcttccaagtaa

Transcript

evm.model.Ap10.1858

ATGGAGGAAGGATGGCACTTGGACGCATTTGATGACGGTTCTCTAAAAATCGTCGGGGAAGCACAATTGAGGAAATATGGACAGTTTTTGGAGGAATATGCGTCCCAGTTAAAAGCTATCGAGGATGCGCTGGACGATTCTGTTGGAGATTCCTGGGATTTTACTCTTGATCCCATTGCTCTGCAGACATTGCCATATGAGCAGTCCAGGCTGCTGGAACTCATCAAGACAGACAACAAGGTTTTTAACAAAGTGGTCATGGTGTTTGCTTCCTTATGCCGAGAAATGGACCAGCTGAAACATGAGGCCACTACAAAGTTCTACACTCCTCTGTTACTTTATGAAGAAGCTGGAGGAGATGATAAAGACCAAGCCCAAGAGGGAGACAATCAAGTACATCTCGGGAGGATGTTACCTTTACTACAAGATGTTTCTAGTTTTGTGACGCGCTCTTATGAAGTTGTCAAGAATGTGGTGCAACAGTTAGCTTCAGTATATTCAAGAGACGGCCCTAAGGTCATGGATGTGACAGGAGTTCATTTTACGACTGTTTTTGAACATCTTGCTGGCCTCATGGGGGTTCTGATTACTTTGGATGAGATCATTGATGCCAGTCACACGCTAAAAGAACACTGGAAACAGTACAGAAGAATGATCAAATCAGTTTACCACAACACTGCTATGTTTGGTGTTGAAGAAGCAAAACTTCGCCCACTTGAAAAACTCTTGATGAGCTTGGAAGGACAGCTTCTTGATGGTGTTATTTTGCAGAACTGTATAGAGCAGCCATTTGAAAGTCAGTATGTGAGAGTGGCCAGAAATAATGAATTTGCCGAGGAATTCCTCTATAACATCAGGATCATCTTTCAAAGTCTTGACACAAGAATGAGTGAACCTCATGAAGTTGATCAGAGACAGAAACTCGTTGGCCTTCTTGGGTTGTTTATCCTACACTTTCAACTTTATAGAGGGATTGATAAAAAGTTCTTCAGCAAGTTGTGGGATATCCACAAAAAAGTACCTTCTGTCCATCTGGCTGGAGACATCATGTTTTTTCCAAATGAGTTTCTCCTCCGAAGAATTCCTCACCTGAACAAGATTGTTGACAAGAAACAGAAGGTTGCTGTGGAAACCTCCAAGGAACAGTACTTGACGAACTGCAATCAAAACTTGGTCAGGGATTCTCAGCTTTACCAGATGCAAGTCAGTTCGTGGATGGTCCACATGGAGTCAGCTCTGAGTAAGGGAGGATCTTTGGTGGATGATCTCAATGCACGCTGTGTTCTGTTCATTAAGGGTGTTCTTATTGCACACACCGTGAGTCATTTGGTGCGTACTGTCATGAACATGCATCTGGTGCTGTCCAAACCACTGACCAAGACTGCCGTTTTGGCTCTGTGCAGGCTCACAGAACTTCTGAAGGCCATTGAGCACACGTTTCACAGGCGCAGTATGCTTATAGCAGAAAGTGTTAATCACATGATCCAGCATTTGACGTTTATGGCGTTAGCTTGTATTGATACTGCTAAGAAGCGCATTGCAGCAGACAAGAAGTATACAGACAAACGACTTGATGTTTTGGCAGCACTTGTTTTGGTGCAGAATGCTCTCAATGGCCCAGCAACAAAGGAACGCAGGCTCGTCACCATGTTAGGCCTCCATGTAGGAACACAGATAAAATGCTTCAGAGATGACGAGATGGCGAGTTTAAGCAGTGTGATGAAACGAATAAACCTCATCAGTGATTTAAGAGCAAGGGTCAAGAAAGCTTGTGATTGTGGCTTTCTTCACTGGCACAGGGTTGTGTTTCCAATTTATTTGGATGATCTTTATGAGAACGTAACGGACGTTCATCGAATTCATTACATGATTGCCGCACTAGGAGACTGTGTTCCAGTCCTTCAGCAAGTGAAGCACGAGCCGTCAGCCCAGGTCATGCTGGAGCTGTTCGAGAAAGAAATTGGTGACACGCTACATGAACACTTGCTTCAACCATTGTGTCGTGACATTGAAACAGATCTACGACTTCACATTCATCAGCATCTACAGTTAGATGACAGAAATCCTTTCAAGGTTGGGCTAAGAGATCTCTCCCAATTTTTGAAAATAAGACCAATCAGATTTTTCCATCAGTTCGTTAACATCAAACAACATGTGACTCATTACCTGGACACGACGTTCTATAACTTGACCACAGTAGCTCTTCATGACTGGAGGACGTACGGTGAGATGAGAAACCAAGCGAGCCAGAAATACGGCCTGGAAATGACTGAAGCTCATCTGCCAAGTCAGACACTTGAACAGGGTCTGGACGTGTTGGAGATCATGCGGAACATTCATGTGTTCGTTTCTCGATATTTGTACAACCTTAACAATCAGATTTTCGTTGAACTGGCGTCCAACAACAAACATTTGAACACGATCAACATCCGTCACATTGCCAACTCCATCAGAACACACGGCTCTGGAATCATGAACACAACAGTGAACTTCACCTATCAGTTCCTGCGCAAGAAATTCTTCATCTTTTCACAGTTCTTGTACGATGAACACATCAAGGCAAGACTCATTAAGGATATTCGTTTCTTCAAAGAAACCAAGGAGCAATCAGATCAGAAATACCCGTTTGAACGAGCAGAGAAGTTTAACAAAGGAATCCGTAAGCTCGGTTTGACTCCCGATGGACACACATACTTGGATCAGTTTAGGGTGCTGATCAGTCAGATAGGAAACGCCATGGGCTATATTCGTATGATTCGCTCTGGAGGACTTCATTGCTGCAGTAACGCTATCAGATTCGTTCCTGATCTTGAAGACATTGTGTCCTTTGAGGAGCTTGTAACAGAAGAGAATTTGTCAGAAGAGTCAACACAGGCTTCCAAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2M389	WASH complex subunit 4 OS=Homo sapiens OX=9606 GN=WASHC4 PE=1 SV=2
Q3UMB9	WASH complex subunit 4 OS=Mus musculus OX=10090 GN=Washc4 PE=1 SV=2
Q54R74	WASH complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=washc4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003089 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14745 all species →	WASH-4_N	WASH complex subunit 4, N-terminal	Domain	Interproscan
PF14744 all species →	WASH-7_mid	WASH complex subunit 7	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027307 all species →	Family	WASH complex subunit 7	Interproscan
IPR028191 all species →	Domain	WASH complex subunit 4, N-terminal	Interproscan
IPR028282 all species →	Domain	WASH complex subunit 7, central domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31409 all species →	WASH COMPLEX SUBUNIT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0007032 all species →	Biological Process	endosome organization	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0071203 all species →	Cellular Component	WASH complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18465	MRT43, SWIP; WASH complex subunit 7	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.