Gene detail

Detailed information of evm.model.Ap10.1924 in Astrangia poculata

Genomic Location: Ap10:19451796...19463838
NR annotation: RMX61533.1, hypothetical protein pdam_00013734 [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55861	DNA replication licensing factor mcm2 OS=Xenopus laevis OX=8355 GN=mcm2 PE=1 SV=2
Q6DIH3	DNA replication licensing factor mcm2 OS=Xenopus tropicalis OX=8364 GN=mcm2 PE=2 SV=1
P49736	DNA replication licensing factor MCM2 OS=Homo sapiens OX=9606 GN=MCM2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006068 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12619 all species →	MCM2_N	Mini-chromosome maintenance protein 2	Family	Interproscan
PF17855 all species →	MCM_lid	MCM AAA-lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031327 all species →	Family	Mini-chromosome maintenance protein	Interproscan
IPR008045 all species →	Family	DNA replication licensing factor Mcm2	Interproscan
IPR041562 all species →	Domain	MCM, AAA-lid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11630 all species →	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006270 all species →	Biological Process	DNA replication initiation	Interproscan
GO:0042555 all species →	Cellular Component	MCM complex	Interproscan
GO:1905775 all species →	Biological Process	obsolete negative regulation of DNA helicase activity	Interproscan
GO:0000727 all species →	Biological Process	double-strand break repair via break-induced replication	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0006268 all species →	Biological Process	DNA unwinding involved in DNA replication	Interproscan
GO:0017116 all species →	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0043138 all species →	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:1902975 all species →	Biological Process	mitotic DNA replication initiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap10.1924.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.