Detailed information of evm.model.Ap10.194 in Astrangia poculata

Genomic Location: Ap10:1837706...1863215
NR annotation: XP_020621932.1, hemicentin-2-like isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B8VIW9Fibronectin type III domain-containing protein OS=Acropora millepora OX=45264 PE=1 SV=1
Q96RW7Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
Q8NDA2Hemicentin-2 OS=Homo sapiens OX=9606 GN=HMCN2 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000412 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07679
all species →
I-setImmunoglobulin I-set domainDomainInterproscan
PF13927
all species →
Ig_3Immunoglobulin domainDomainInterproscan
PF13882
all species →
Bravo_FIGEYBravo-like intracellular regionDomainInterproscan
PF00041
all species →
fn3Fibronectin type III domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051170
all species →
FamilyNeural and epithelial cell adhesion domain-containing proteinInterproscan
IPR007110
all species →
DomainImmunoglobulin-like domainInterproscan
IPR036179
all species →
Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR013098
all species →
DomainImmunoglobulin I-setInterproscan
IPR003961
all species →
DomainFibronectin type IIIInterproscan
IPR036116
all species →
Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR003598
all species →
DomainImmunoglobulin subtype 2Interproscan
IPR026966
all species →
DomainNeurofascin/L1/NrCAM, C-terminal domainInterproscan
IPR003599
all species →
DomainImmunoglobulin subtypeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12231
all species →
CTX-RELATED TYPE I TRANSMEMBRANE PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0043005
all species →
Cellular Componentneuron projectionInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K06756NRCAM; neuronal cell adhesion molecule-Cell adhesion moleculesko04514deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP