Genomic Location: Ap10:19736736...19761619
NR annotation: XP_020632947.1, sortilin-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap10.1945 |
| Transcript |
| evm.model.Ap10.1945 |
| Protein |
| evm.model.Ap10.1945 |
| UniProt accession | Description |
|---|---|
| Q99523 | Sortilin OS=Homo sapiens OX=9606 GN=SORT1 PE=1 SV=3 |
| Q6PHU5 | Sortilin OS=Mus musculus OX=10090 GN=Sort1 PE=1 SV=1 |
| O54861 | Sortilin OS=Rattus norvegicus OX=10116 GN=Sort1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000636 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF15901 all species → | Sortilin_C | Sortilin, neurotensin receptor 3, C-terminal | Domain | Interproscan |
| PF15902 all species → | Sortilin-Vps10 | Sortilin, neurotensin receptor 3, | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006581 all species → | Domain | VPS10 | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR031777 all species → | Domain | Sortilin, C-terminal | Interproscan |
| IPR031778 all species → | Domain | Sortilin, N-terminal | Interproscan |
| IPR050310 all species → | Family | VPS10-related sortilin family receptors | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12106 all species → | SORTILIN RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005794 all species → | Cellular Component | Golgi apparatus | Interproscan |
| GO:0006892 all species → | Biological Process | post-Golgi vesicle-mediated transport | Interproscan |
| GO:0006895 all species → | Biological Process | Golgi to endosome transport | Interproscan |
| GO:0006897 all species → | Biological Process | endocytosis | Interproscan |
| GO:0016021 all species → | Cellular Component | membrane | Interproscan |
| GO:0016050 all species → | Biological Process | vesicle organization | Interproscan |
evm.model.Ap10.1945.Transcript abundance of evm.model.Ap10.1945 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
