Gene detail

Detailed information of evm.model.Ap10.1946 in Astrangia poculata

Genomic Location: Ap10:19764610...19777087
NR annotation: XP_020632946.1, gamma-tubulin complex component 6-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.1946

atgccggacaggttccttgccgatgtgtgcatgtgctcacaagcattcaagaaggcgccagatgatcccaaacctaagttccccacaggtgttaaattgttaacatacttgtaccagctgtgcttggagcactccagctccccgtcgtatcccatcttgttgtctcttcttaaacacagcgtactgccgtacatcatgtttgttcaaacttgggctttcaagggcatttgcaatgacatgttcggcgagttcatgattgaaatggatgagcaatatttagcatacagagataagaacttctggacccaaggctttgtgatggttggtcgtgacaagctcgactgcgtaccattatttctaagtgaactttctgatgatatatttgtttgtggaaaaactatcaacttactgaagctttgctgtcctgagcactatttgtgtgatcctggaattcctctgcccaaaatggaagtgacgttttccatgcggcggctgagtagaattgaggaggagtgtaaacaatacatgactgaaatacagagaatgcatcagcagctacaagaacaaagagaaaaggagaacaaagccatcgaggatgaaaagcaacgggaaattcttgaagaacgtgaaagagccgcaaaagccttgtcggaaataacagatcttattcagaaagcaaaggacgcatttgagcagaaaaagcgagaagactttaaaatgttaaaggaacagatggaagatgcattcaagcataaagctttggccagaaaagaagaaaaagaggctgatattaaacgtctgcaagaagcaaaggatagagaagtcaccacagcctcggtcgaggaagagatgaaaaacaaggcaagagaagaactgatcaagtactatgatgaactgagccgtgaggtggagcatagagagtttcgtgcccagtggctcatccggcgaagattactagattctgctagagcccagttcctggcccaggagcaggctcggttggacagcttgatggatcagattactcaagcctctgctgcccagaatcctgttaaaacaacggatatagccgatgcgcggcctggtaaagactacgaaaaacctgaggctagagaaaaagtggcaacgccagcttcagctccgagtccaagcattgtatcgcttatcgctagcggcgtaaaaactgatgcattgttgaaagctgagcagggcaagagcacgtctggtttgtcagattccacgactacagcatctaacatcgctaacgcacaagatgagcagctcactacgtcgagttctgaagcagctactgctgaaagcagggccaggaagacctggaacagtcctgacgctagtgctgccgagttagaaaagcttacagaagcaggttcaggaaggaaaacatgggaagccccgcctgatggtgaggtgaagatagctgctgttacccctaagagccatccgtcagagtcatcaatacagtttgccatgtacagggataaacaaaagagtggcgaagaagaaaagacgccaggtttgcgtgtagatgctttgaaaacaagcacgccccacgtagctgattcatcattgcaaaacattctctaccccagtacaccctcaggaaagataggcctggatactcagccctcaagcattgtaacccggccttcagattttgacgctggaggcctgggcttgggtcacccctcggattcttccgctcaagacgttttatacggcagcgtaacggaagcggcgagtgcagctaggacgccacactcgcaagggcacccgtccgactcctcggcacagcagtttctgtacagtggcggaacccaggcaggaaccgacactgaaggtcgctctttggagcatggccacccgagtgacgcatctgtcaacgacctcttgtaccccaccaccctggacacacccactctccatacccctcgtctgccccaacacggtcacccttccgactcacaagtgtctctgtctgtctctggctgcggcgatggtttaaacgttgcaccagccatgcagcacagctccagatcaacatggcagcatccttctgatgcgtcagtgcagacgcttctgggaaacataaccctactcggagacagccaagagacgacccgtgggacccctccctctagcgtggctcaagacattttgtatcctggtctcaatgagcaatcgatgtctcacatgtcacacacacgtggtaccccaccccagagcgtagctcaggacattttgtacccacaaggggaggagtcagggcaagcccttggtgtagtccccacacgtggggctccaccctcgagtgttattcaggacattatgtatccaagtggggagggcacagtaggagagaagacgaagatgtcgactcgtgggcatgagcccgcagtcaagatcaaaaatattatgtattacgtcaaagacgagaaagcagttttggagtcacagtcaaggcagttggagtttgaggacgtgtggttagcttctcaagttgaaccgcttcaggacaactttgatgtgttagaccagaaaccatcgtctaatctgttacaaggcgcatatggctcatttccagtcgcacaaggcgcaggtgccgatgacgatgatacagacgcggcacggctgatgtcacttccggttttgcttcagagatctgtcatggcgcctcttcttgctcagatatcgttggttaattctgctgttgtggcgtacttcattgaagatcttcaaatcaacaaacactttgacctgttcaagaaactgctgttcatggaagatggcgaattttctctctcgctctccaaccaactgttcgaaaagcttgcctcaggggtgtccccacgggagatgtgttctgccacagtgatgaacgccattgtaggaaaggctcttcagttgtctgtgtactctgatactacagagcatgcgcaaaacctcgcatttgcccttaaaagcttgcctgatatatttaaaccaaatgaaataagtaccctagacttccttgagttacggtacagagtggaatggccgctcaacatcgttatcacagagaaatccgttatcagatacaacaaggtcttctcattcatgctacggttaaaacgcctgtcgtgggtgttacgtgacatatggttccatttgaagcatgtcgcttattctcgcaacgcaccgggctcgcctcaacttcgtcagctgcagctcttcagacatgagatgcagcattttgtacataatcttgaaggatacctgtcaaaccagattctaaacgtgacgtggtcagagtttcaggaaggactgctgaatgtcagaagcttggacgatttgcataaccaacacgccgagtacctgagaaaagccatcttccgttcactgttgagtagaaaagccgcgcctgtaatgaccatcatctctgatctgggcacccttatactcaagatgcgcacgcaacttttagcgtccccatggcaacaggcccccaacacagggacggactaa

Transcript

evm.model.Ap10.1946

ATGCCGGACAGGTTCCTTGCCGATGTGTGCATGTGCTCACAAGCATTCAAGAAGGCGCCAGATGATCCCAAACCTAAGTTCCCCACAGGTGTTAAATTGTTAACATACTTGTACCAGCTGTGCTTGGAGCACTCCAGCTCCCCGTCGTATCCCATCTTGTTGTCTCTTCTTAAACACAGCGTACTGCCGTACATCATGTTTGTTCAAACTTGGGCTTTCAAGGGCATTTGCAATGACATGTTCGGCGAGTTCATGATTGAAATGGATGAGCAATATTTAGCATACAGAGATAAGAACTTCTGGACCCAAGGCTTTGTGATGGTTGGTCGTGACAAGCTCGACTGCGTACCATTATTTCTAAGTGAACTTTCTGATGATATATTTGTTTGTGGAAAAACTATCAACTTACTGAAGCTTTGCTGTCCTGAGCACTATTTGTGTGATCCTGGAATTCCTCTGCCCAAAATGGAAGTGACGTTTTCCATGCGGCGGCTGAGTAGAATTGAGGAGGAGTGTAAACAATACATGACTGAAATACAGAGAATGCATCAGCAGCTACAAGAACAAAGAGAAAAGGAGAACAAAGCCATCGAGGATGAAAAGCAACGGGAAATTCTTGAAGAACGTGAAAGAGCCGCAAAAGCCTTGTCGGAAATAACAGATCTTATTCAGAAAGCAAAGGACGCATTTGAGCAGAAAAAGCGAGAAGACTTTAAAATGTTAAAGGAACAGATGGAAGATGCATTCAAGCATAAAGCTTTGGCCAGAAAAGAAGAAAAAGAGGCTGATATTAAACGTCTGCAAGAAGCAAAGGATAGAGAAGTCACCACAGCCTCGGTCGAGGAAGAGATGAAAAACAAGGCAAGAGAAGAACTGATCAAGTACTATGATGAACTGAGCCGTGAGGTGGAGCATAGAGAGTTTCGTGCCCAGTGGCTCATCCGGCGAAGATTACTAGATTCTGCTAGAGCCCAGTTCCTGGCCCAGGAGCAGGCTCGGTTGGACAGCTTGATGGATCAGATTACTCAAGCCTCTGCTGCCCAGAATCCTGTTAAAACAACGGATATAGCCGATGCGCGGCCTGGTAAAGACTACGAAAAACCTGAGGCTAGAGAAAAAGTGGCAACGCCAGCTTCAGCTCCGAGTCCAAGCATTGTATCGCTTATCGCTAGCGGCGTAAAAACTGATGCATTGTTGAAAGCTGAGCAGGGCAAGAGCACGTCTGGTTTGTCAGATTCCACGACTACAGCATCTAACATCGCTAACGCACAAGATGAGCAGCTCACTACGTCGAGTTCTGAAGCAGCTACTGCTGAAAGCAGGGCCAGGAAGACCTGGAACAGTCCTGACGCTAGTGCTGCCGAGTTAGAAAAGCTTACAGAAGCAGGTTCAGGAAGGAAAACATGGGAAGCCCCGCCTGATGGTGAGGTGAAGATAGCTGCTGTTACCCCTAAGAGCCATCCGTCAGAGTCATCAATACAGTTTGCCATGTACAGGGATAAACAAAAGAGTGGCGAAGAAGAAAAGACGCCAGGTTTGCGTGTAGATGCTTTGAAAACAAGCACGCCCCACGTAGCTGATTCATCATTGCAAAACATTCTCTACCCCAGTACACCCTCAGGAAAGATAGGCCTGGATACTCAGCCCTCAAGCATTGTAACCCGGCCTTCAGATTTTGACGCTGGAGGCCTGGGCTTGGGTCACCCCTCGGATTCTTCCGCTCAAGACGTTTTATACGGCAGCGTAACGGAAGCGGCGAGTGCAGCTAGGACGCCACACTCGCAAGGGCACCCGTCCGACTCCTCGGCACAGCAGTTTCTGTACAGTGGCGGAACCCAGGCAGGAACCGACACTGAAGGTCGCTCTTTGGAGCATGGCCACCCGAGTGACGCATCTGTCAACGACCTCTTGTACCCCACCACCCTGGACACACCCACTCTCCATACCCCTCGTCTGCCCCAACACGGTCACCCTTCCGACTCACAAGTGTCTCTGTCTGTCTCTGGCTGCGGCGATGGTTTAAACGTTGCACCAGCCATGCAGCACAGCTCCAGATCAACATGGCAGCATCCTTCTGATGCGTCAGTGCAGACGCTTCTGGGAAACATAACCCTACTCGGAGACAGCCAAGAGACGACCCGTGGGACCCCTCCCTCTAGCGTGGCTCAAGACATTTTGTATCCTGGTCTCAATGAGCAATCGATGTCTCACATGTCACACACACGTGGTACCCCACCCCAGAGCGTAGCTCAGGACATTTTGTACCCACAAGGGGAGGAGTCAGGGCAAGCCCTTGGTGTAGTCCCCACACGTGGGGCTCCACCCTCGAGTGTTATTCAGGACATTATGTATCCAAGTGGGGAGGGCACAGTAGGAGAGAAGACGAAGATGTCGACTCGTGGGCATGAGCCCGCAGTCAAGATCAAAAATATTATGTATTACGTCAAAGACGAGAAAGCAGTTTTGGAGTCACAGTCAAGGCAGTTGGAGTTTGAGGACGTGTGGTTAGCTTCTCAAGTTGAACCGCTTCAGGACAACTTTGATGTGTTAGACCAGAAACCATCGTCTAATCTGTTACAAGGCGCATATGGCTCATTTCCAGTCGCACAAGGCGCAGGTGCCGATGACGATGATACAGACGCGGCACGGCTGATGTCACTTCCGGTTTTGCTTCAGAGATCTGTCATGGCGCCTCTTCTTGCTCAGATATCGTTGGTTAATTCTGCTGTTGTGGCGTACTTCATTGAAGATCTTCAAATCAACAAACACTTTGACCTGTTCAAGAAACTGCTGTTCATGGAAGATGGCGAATTTTCTCTCTCGCTCTCCAACCAACTGTTCGAAAAGCTTGCCTCAGGGGTGTCCCCACGGGAGATGTGTTCTGCCACAGTGATGAACGCCATTGTAGGAAAGGCTCTTCAGTTGTCTGTGTACTCTGATACTACAGAGCATGCGCAAAACCTCGCATTTGCCCTTAAAAGCTTGCCTGATATATTTAAACCAAATGAAATAAGTACCCTAGACTTCCTTGAGTTACGGTACAGAGTGGAATGGCCGCTCAACATCGTTATCACAGAGAAATCCGTTATCAGATACAACAAGGTCTTCTCATTCATGCTACGGTTAAAACGCCTGTCGTGGGTGTTACGTGACATATGGTTCCATTTGAAGCATGTCGCTTATTCTCGCAACGCACCGGGCTCGCCTCAACTTCGTCAGCTGCAGCTCTTCAGACATGAGATGCAGCATTTTGTACATAATCTTGAAGGATACCTGTCAAACCAGATTCTAAACGTGACGTGGTCAGAGTTTCAGGAAGGACTGCTGAATGTCAGAAGCTTGGACGATTTGCATAACCAACACGCCGAGTACCTGAGAAAAGCCATCTTCCGTTCACTGTTGAGTAGAAAAGCCGCGCCTGTAATGACCATCATCTCTGATCTGGGCACCCTTATACTCAAGATGCGCACGCAACTTTTAGCGTCCCCATGGCAACAGGCCCCCAACACAGGGACGGACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G5E8P0	Gamma-tubulin complex component 6 OS=Mus musculus OX=10090 GN=Tubgcp6 PE=1 SV=1
Q96RT7	Gamma-tubulin complex component 6 OS=Homo sapiens OX=9606 GN=TUBGCP6 PE=1 SV=3
Q95ZG3	Spindle pole body component 97 OS=Dictyostelium discoideum OX=44689 GN=spc97 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002795 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17681 all species →	GCP_N_terminal	Gamma tubulin complex component N-terminal	Domain	Interproscan
PF04130 all species →	GCP_C_terminal	Gamma tubulin complex component C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042241 all species →	Homologous_superfamily	Gamma-tubulin complex component, C-terminal domain superfamily	Interproscan
IPR007259 all species →	Family	Gamma-tubulin complex component protein	Interproscan
IPR041470 all species →	Domain	Gamma tubulin complex component protein, N-terminal	Interproscan
IPR040457 all species →	Domain	Gamma tubulin complex component, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19302 all species →	GAMMA TUBULIN COMPLEX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0000923 all species →	Cellular Component	equatorial microtubule organizing center	Interproscan
GO:0000930 all species →	Cellular Component	gamma-tubulin complex	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005815 all species →	Cellular Component	microtubule organizing center	Interproscan
GO:0007020 all species →	Biological Process	microtubule nucleation	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0043015 all species →	Molecular Function	gamma-tubulin binding	Interproscan
GO:0051011 all species →	Molecular Function	microtubule minus-end binding	Interproscan
GO:0051225 all species →	Biological Process	spindle assembly	Interproscan
GO:0051321 all species →	Biological Process	meiotic cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap10.1946.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.