Genomic Location: Ap10:19956289...19972534
NR annotation: CAH3136258.1, unnamed protein product, partial [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap10.1959 |
| Transcript |
| evm.model.Ap10.1959 |
| Protein |
| evm.model.Ap10.1959 |
| UniProt accession | Description |
|---|---|
| Q28E45 | Protein MCM10 homolog OS=Xenopus tropicalis OX=8364 GN=mcm10 PE=2 SV=1 |
| Q7L590 | Protein MCM10 homolog OS=Homo sapiens OX=9606 GN=MCM10 PE=1 SV=2 |
| Q5EAW4 | Protein MCM10 homolog OS=Xenopus laevis OX=8355 GN=mcm10 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004931 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF09332 all species → | Mcm10 | Mcm10 replication factor | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015411 all species → | Domain | Replication factor Mcm10, C-terminal | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR040184 all species → | Family | Minichromosome maintenance protein 10 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13454 all species → | PROTEIN MCM10 HOMOLOG | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003688 all species → | Molecular Function | DNA replication origin binding | Interproscan |
| GO:0003690 all species → | Molecular Function | double-stranded DNA binding | Interproscan |
| GO:0003697 all species → | Molecular Function | single-stranded DNA binding | Interproscan |
| GO:0006270 all species → | Biological Process | DNA replication initiation | Interproscan |
| GO:0043596 all species → | Cellular Component | nuclear replication fork | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10736 | MCM10; minichromosome maintenance protein 10 | - | DNA replication proteins | ko03032 | deepkoala |
Transcript abundance of evm.model.Ap10.1959 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
