Gene detail

Detailed information of evm.model.Ap10.1984 in Astrangia poculata

Genomic Location: Ap10:20268536...20280162
NR annotation: XP_020606083.1, fibropellin-1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.1984

atgtattcggcacttttaggaaatccttgtgaacttaatgattacaaagatctgaatcaaggtgatcgctcagagggctacaaagatgccacagacaagtgcgattctgacgaccttgcagatgaatggcattactggtacgtagtgtctggtaacgccggcaatgccctggcttctaaaaacgctcctcaaaaaaattcatgcggaacaaaggaccgactgtatctaaaggatgggcatccagtctatagcgacggcgaggtcactaaaaaagtttgcgtagctcaaggaaatacggcatgcgctagcgagttagatatacaagtaatcaactgcggtgctttctacttgtacaaactcgttgatctgagggactgcacaggcgatccatggcgttactgcactaatggaaaagaggatgttacttgtgatggtgtttcttgtcctggtggtcagctgtgtgcgctgagaaacaatggcaaacaaactgaatgcgtctctgcttcagcgccttcaggtgatccatgttcgcctgatccgtgtcaaaatggtggtacgtgtaacgatgataactctggaggctttacatgtagttgtgcttcagggtacactggggctgactgcagcacgaaaagtgcagcgcctccagctgatccatgttcgcctaattcgtgtcagaatggtggtacgtgtaacgacaataactctggaggctttacatgtagttgtgcttcagggtacactggggctgactgcagcacgagcagtccagtacccccatcagctgctccgtgttcgactaatccgtgtcaaaatggcggtacatgtgacaaggataactctggaggctttacttgtagttgcccttcagggtacactggtgctgactgcagcacgaacagtcaagttcctccagattgtcaaggagcactcggcatggaaagcggccaaatccctgacggaaaaatggatgcgaagacttctgagaattttacccttaccagtcccagtcggggcaggctcaacttacaacaagaaggctccaaatcgggcggctgggttgccggaattatcgataaatggcaatggttttctattcgtttcggtgatgattacaccatagtaacaggtatagcaacacagggaaggcaagatgaagcgcagtgggttactaagtacaagttacgctacaggacatggcaggatttcagtcctatctggtacactgaaccaggacaaagcacgcccaaggaatttgttggaaatacagaccgggattctgttgtgtaccgtgaactaaacccgccaatcgttagaccagttttcatcaacgtccgtccacaggggtggtataacgccatagcaatgagagcagaactttatggttgtaaagacgcgtgtatgtccagtccatgcttgaatggtggtacttgtaccagtaactatacatcaggaacttttacatgcagttgtccttcaggatacactggtgatacctgcgtcacaggccctccgccagatccatgttcacctaatccgtgtcaaaatggcggtacgtgcaacgacgataactctggaggctttacatgtagttgccttttagggtacagtggaggtacctgcagtcaagcgccttcagctgatccatgttcgcctgatccgtgtcaaaatggtggtacatgtaacgacaataactctggaggctttacatgtagttgtccttcagggtacactggggacacctgtagcacgagcgcaagcagtcaagtccctccagattgtcaaggtgctctcggtatgaaaagcggccaaatccctgacggaaaaattgatgctttgtcttcggagaatgttaacctaaccggccccagtcggggcaggctcaacttgcaacaacaaggatccaaatcaggtggctgggttgccggagatatcgataaatggcaatggtttgttgttcgttttaagaacgattacaccatagtaacaggcgtggcaacgcaaggcaggcaagatgcagagcagtgggttattaaatatcacttacagtacaggacatgggagaatttcgatcacaccgattacattgaaccaggacaaaacacgaccaaggcttctttattccaattgcttaaattggaaattcactgcgatgatcatttatcactttcatatccatccgcagttcatatgtga

Transcript

evm.model.Ap10.1984

ATGTATTCGGCACTTTTAGGAAATCCTTGTGAACTTAATGATTACAAAGATCTGAATCAAGGTGATCGCTCAGAGGGCTACAAAGATGCCACAGACAAGTGCGATTCTGACGACCTTGCAGATGAATGGCATTACTGGTACGTAGTGTCTGGTAACGCCGGCAATGCCCTGGCTTCTAAAAACGCTCCTCAAAAAAATTCATGCGGAACAAAGGACCGACTGTATCTAAAGGATGGGCATCCAGTCTATAGCGACGGCGAGGTCACTAAAAAAGTTTGCGTAGCTCAAGGAAATACGGCATGCGCTAGCGAGTTAGATATACAAGTAATCAACTGCGGTGCTTTCTACTTGTACAAACTCGTTGATCTGAGGGACTGCACAGGCGATCCATGGCGTTACTGCACTAATGGAAAAGAGGATGTTACTTGTGATGGTGTTTCTTGTCCTGGTGGTCAGCTGTGTGCGCTGAGAAACAATGGCAAACAAACTGAATGCGTCTCTGCTTCAGCGCCTTCAGGTGATCCATGTTCGCCTGATCCGTGTCAAAATGGTGGTACGTGTAACGATGATAACTCTGGAGGCTTTACATGTAGTTGTGCTTCAGGGTACACTGGGGCTGACTGCAGCACGAAAAGTGCAGCGCCTCCAGCTGATCCATGTTCGCCTAATTCGTGTCAGAATGGTGGTACGTGTAACGACAATAACTCTGGAGGCTTTACATGTAGTTGTGCTTCAGGGTACACTGGGGCTGACTGCAGCACGAGCAGTCCAGTACCCCCATCAGCTGCTCCGTGTTCGACTAATCCGTGTCAAAATGGCGGTACATGTGACAAGGATAACTCTGGAGGCTTTACTTGTAGTTGCCCTTCAGGGTACACTGGTGCTGACTGCAGCACGAACAGTCAAGTTCCTCCAGATTGTCAAGGAGCACTCGGCATGGAAAGCGGCCAAATCCCTGACGGAAAAATGGATGCGAAGACTTCTGAGAATTTTACCCTTACCAGTCCCAGTCGGGGCAGGCTCAACTTACAACAAGAAGGCTCCAAATCGGGCGGCTGGGTTGCCGGAATTATCGATAAATGGCAATGGTTTTCTATTCGTTTCGGTGATGATTACACCATAGTAACAGGTATAGCAACACAGGGAAGGCAAGATGAAGCGCAGTGGGTTACTAAGTACAAGTTACGCTACAGGACATGGCAGGATTTCAGTCCTATCTGGTACACTGAACCAGGACAAAGCACGCCCAAGGAATTTGTTGGAAATACAGACCGGGATTCTGTTGTGTACCGTGAACTAAACCCGCCAATCGTTAGACCAGTTTTCATCAACGTCCGTCCACAGGGGTGGTATAACGCCATAGCAATGAGAGCAGAACTTTATGGTTGTAAAGACGCGTGTATGTCCAGTCCATGCTTGAATGGTGGTACTTGTACCAGTAACTATACATCAGGAACTTTTACATGCAGTTGTCCTTCAGGATACACTGGTGATACCTGCGTCACAGGCCCTCCGCCAGATCCATGTTCACCTAATCCGTGTCAAAATGGCGGTACGTGCAACGACGATAACTCTGGAGGCTTTACATGTAGTTGCCTTTTAGGGTACAGTGGAGGTACCTGCAGTCAAGCGCCTTCAGCTGATCCATGTTCGCCTGATCCGTGTCAAAATGGTGGTACATGTAACGACAATAACTCTGGAGGCTTTACATGTAGTTGTCCTTCAGGGTACACTGGGGACACCTGTAGCACGAGCGCAAGCAGTCAAGTCCCTCCAGATTGTCAAGGTGCTCTCGGTATGAAAAGCGGCCAAATCCCTGACGGAAAAATTGATGCTTTGTCTTCGGAGAATGTTAACCTAACCGGCCCCAGTCGGGGCAGGCTCAACTTGCAACAACAAGGATCCAAATCAGGTGGCTGGGTTGCCGGAGATATCGATAAATGGCAATGGTTTGTTGTTCGTTTTAAGAACGATTACACCATAGTAACAGGCGTGGCAACGCAAGGCAGGCAAGATGCAGAGCAGTGGGTTATTAAATATCACTTACAGTACAGGACATGGGAGAATTTCGATCACACCGATTACATTGAACCAGGACAAAACACGACCAAGGCTTCTTTATTCCAATTGCTTAAATTGGAAATTCACTGCGATGATCATTTATCACTTTCATATCCATCCGCAGTTCATATGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W6R5	Retinoschisin OS=Takifugu rubripes OX=31033 GN=xlrs1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012396 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR051830 all species →	Family	Neurogenic locus notch homolog	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24033 all species →	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap10.1984.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.