Genomic Location: Ap10:20811274...20827187
NR annotation: KAJ7370748.1, hypothetical protein OS493_030177 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap10.2028 |
| Transcript |
| evm.model.Ap10.2028 |
| Protein |
| evm.model.Ap10.2028 |
| UniProt accession | Description |
|---|---|
| M9NDE3 | Protein bark beetle OS=Drosophila melanogaster OX=7227 GN=bark PE=1 SV=1 |
| Q24JV9 | Galectin-3-binding protein A OS=Danio rerio OX=7955 GN=lgals3bpa PE=2 SV=1 |
| G3V801 | Neurotrypsin OS=Rattus norvegicus OX=10116 GN=Prss12 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000535 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13229 all species → | Beta_helix | Right handed beta helix region | Repeat | Interproscan |
| PF00530 all species → | SRCR | Scavenger receptor cysteine-rich domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036772 all species → | Homologous_superfamily | SRCR-like domain superfamily | Interproscan |
| IPR006626 all species → | Repeat | Parallel beta-helix repeat | Interproscan |
| IPR001190 all species → | Domain | SRCR domain | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR039448 all species → | Domain | Right handed beta helix domain | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR000998 all species → | Domain | MAM domain | Interproscan |
| IPR012334 all species → | Homologous_superfamily | Pectin lyase fold | Interproscan |
| IPR011050 all species → | Homologous_superfamily | Pectin lyase fold/virulence factor | Interproscan |
| IPR053243 all species → | Family | Septate junction maturation regulator | Interproscan |
| IPR016187 all species → | Homologous_superfamily | C-type lectin fold | Interproscan |
| IPR016186 all species → | Homologous_superfamily | C-type lectin-like/link domain superfamily | Interproscan |
| IPR017448 all species → | Domain | SRCR-like domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47653 all species → | PROTEIN BARK BEETLE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
evm.model.Ap10.2028.Transcript abundance of evm.model.Ap10.2028 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
