Gene detail

Detailed information of evm.model.Ap10.2035 in Astrangia poculata

Genomic Location: Ap10:20878813...20888723
NR annotation: XP_020606089.1, uncharacterized protein LOC110044851 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.2035

atgggaaattattcaacagtgttacgtggaataatgtatctgctactgccgttggtacttgtcatgcaacacgtcgaaagcgcaagtctcggaggagatatcacagtcaatacgactctaacactgaacggatcaacttatgtcgtatctcaagaccttgttgtagctgagaacgccactctaactgtacaaccaggagtccaattgcactttgatgttggagttgctttgcaagttaaaggttccctgcaagcaaaaggaaactcgcatggaagaatcgtcttcagcaagataccaacgaacatatctgtgaatgtgaatgatttgaacgtcacagcgccttattacaatgatggaattcgtcttagcgacgggaaaaattaccgtgaaggtcgactggagatttttctaagagggcaatggggaactgtgtgccgtgattcgtttgacataaaagatgctcaggttgcgtgcagacagctgggttttctgggggccaaaaggttctacacacacggcgggggaaccgggcctacttggttggacgaggtggactgcaaggggactgagaagagtttactaatgtgcaaacatccgggaatcggagttgagaattgcgatcactggagggatattggaatagaatgtcacagtctgacaaagttgctgtcaacaaaagtttactggaagggaatcgacttttccgaatccaaaaagacttcatctcttcaatacgtggaggtgttccaggcctacgaagcaataaaaggcagcgaagtcattcctgaccttggccacgtgacagtaaaaagctctgtatatggagtgaagtccgacaacattacttctccgctgaccattagcaacagcagtgtcagagacaacctggtggcgggcatccagataaaaggcaaatcaaaggcgattaatattaagaacacggcagtggataacacaacatatggagacgggttttcatatagagaagcagtgcctgatccagtggatttttgttcttcggatgtgaatgttaccagatttccagtcttttttgaagcgttgggtaagacaagaacgaatgtcgactgcgccaagattttaagaactcagccaggaagccgtttaaccgtgtattatcgatccatgactggtgacaagtttgagttggaggtattcgacggtaccacaagcaatgcgacgatgctcacgtcattgaccgaacggacaggtgtcaatcaggctgtcacgccatcctcaagctctggtcacgaactctacataaggtttcgattcagtgcgggcagaaaagatgccaggctgaaattccttatcacggacgatcaagaccatttccactatgacgtaaatacgcaaagacttctggtagttgtatttaagttcgcgggaaattttgaattatcatcaagcctgctagcccaagaaaatcgtgatggagatatttcctctgtcgtgatatccaactgcacatttaacgacaaccatggaaacggcgtactccttaaaggcatcataggaaagacaaagatttcctcaactgctgtctttcgcaatgaaggtgaaggcatgactgttcagcaaatttacggaatgttaacagctaccgatagtcattttattaacaacggcgcaaacggtcttgaaatcttagacagcagtatcttgttatgtaatctttgtgaactgtcttccaaaggaaatgaacgcaatgggttgtatctccaggatgttgctcttgaaggtgacgtttcggactcagcattcgaaaacaacacggaaaacggatttgcactcactaatggtgctggcaaggttgaattccgaagaatcgctgcagttatgaacacacacagtggggttaagatttatgatggcaaagtgtcatctaacttcagactttctaatttgtcaaacaacatagaagatggttgttgcatatcaaaccaggcgggaactcatgtgttctctaattgcaccgcaaattctaatttgaggcacggtgttagtttggttgacggaaggcctcccaacgggaacgcgctaccaaaatatcaattcacgcactttagtttggaagagagcacaataaatgacaatacccaatacggagtcaggctgggtcctgactgtcagtgttggagcgagtcagcggtcaacgttaccatggcaatcaacaagaatcagattgtgcaaaacaccaaaggaggcatcttcttgtctccaggctggtgcacagggcgctcagactcattaaaaccgagaagagtggagactatcgtgacaaacaaccatttggagaaaaacaaaggtaatgcattctacgtccactgcacaggcctttatggcttagatgcggtaattgaagcaaacacattcacgaacaacacagataaagttctgactttcatggaccacaccttctgttttgcaagctacacaagtaaccccgttaacgtgaagatagataaaaacgttttcataaagaaccgtgctgaacacgttttgtttatcgacttcatttccttcccagaaacgcgttttgctgtcgtaacaaacaatactttccaagacaataaagtcgccacaaaagacctttttccaaacttttttcaacgctcgacatctcgtgcagttattgttcttaaagaaggtagttttaccttgcgcgataacattttggaaaactccggattcctttttcagctttctactctacgtcatgttcaccgacgagttattgacgctaaattcaactggtggggaacaacaaaggaatgcgaaatcgtggacagaatctttgacttccaacacagggttcaactctctccagttgagtacttcccataccttctttccgcaaacaagacaaatgcaattgactccagtgatccaagaccatcctgctttctgagaggttcaagtattggtggaatagtggatagaccactggccttgtcgagcgctggctcgccttacgaagttcgagatgacgtcattatcctgagcaatgggtcgttgatcataccaaaaaatgtgacgcttcatttcccttccaggtcagctatggttgtacaaggaacgcttcttgtagatggaactgaaaaggaaaaggtgagatttacgaagaagcaacatcaaggaagattccgtctaggtggaggacccggagcgtgggaaggaagagtggaattttttatcaatgatacatggtggccgatttgttttcgttactggagatcgttcaccgacgaggcaaaaatcatttgccagcaactcgatctttactattacagctacagtctgcagtacccctttgcgcaggaacctggcttcgtgcacaacgttgtatgcgataggaacatcgatagtgatataatgaattgcagtgctgatacctggcgttttgaatctacttgtcggggatatactgtgcttgtctactgtcagcattacaattgggtcgggcttcatctgacagtgtcaaaccataaaagctcgttgcatcacctggaaatccacgatgctgggtttgcttatcgcagtgatatccaaattcctggtgcagctctcaaagtcgatttgtaccatcataatataagtaacgtattcattaacaattcagtgggtattggcgttcaagtggtatatcagagcttgtgtcacaactattccgtgataccgcactcttttgtatcacacacaaaatcccacggtgttctttcacgatcaccttcccttacacttacagacgcaaacttcacaagaaacgacggcaatggttttgtctatgaatctacctgggataaacttaacactttaactgccaaaatggccagcccagatgtgtacaaaactttccgcgtctgctcaatgaacaaaacgattctattggccaacaaagtgtttcactttactttagagacattggaatatacttcgcagttcaggtgtcagcatgttatggagacagaacccggttacaaactagtcattcaggatctgtattggtcttcgcacagtttctatggtttcttgcacgtgtttgatggtgctaacatatcagttggttcaccatggaagatggaatctttaccgtggagagatcgtcctatcctcaactcgaccaaatcatcggttgcgtttgatttctataagcgccacaaatggaatcttgctattaacttcttggtgtatacagtgaaagagaatgagcaacttaactacgtcggtggagagatcaacatagctcgatgcaagattatcgacagtcacaaggaaagtgtcctaattggaggaaacttgctgaaatctcttaccattactgacacggatattaccaactcttgggaattcggaatacaactttcgccacgtggtatcgaggtcgtcaagatcacttcagtaaaactagaaaagaacaggcagggtatttcaattaaaaagatgtactcgggctccaaggaatttacgattgagaactgtgccatcaacggatcgcgttttcggggcatttacattcacccaggtaccaaaagcacaatccgcattgtaaactcaagtattacaaacggtgaagaccggggtctatatatcgaaggctactatagggaaatgtctctaagcttgttcgtcactggcagtacattcgcttggaacaagaagggagccgtattctgttttaggactcatggaagaacggtacctgtcaccttataa

Transcript

evm.model.Ap10.2035

ATGGGAAATTATTCAACAGTGTTACGTGGAATAATGTATCTGCTACTGCCGTTGGTACTTGTCATGCAACACGTCGAAAGCGCAAGTCTCGGAGGAGATATCACAGTCAATACGACTCTAACACTGAACGGATCAACTTATGTCGTATCTCAAGACCTTGTTGTAGCTGAGAACGCCACTCTAACTGTACAACCAGGAGTCCAATTGCACTTTGATGTTGGAGTTGCTTTGCAAGTTAAAGGTTCCCTGCAAGCAAAAGGAAACTCGCATGGAAGAATCGTCTTCAGCAAGATACCAACGAACATATCTGTGAATGTGAATGATTTGAACGTCACAGCGCCTTATTACAATGATGGAATTCGTCTTAGCGACGGGAAAAATTACCGTGAAGGTCGACTGGAGATTTTTCTAAGAGGGCAATGGGGAACTGTGTGCCGTGATTCGTTTGACATAAAAGATGCTCAGGTTGCGTGCAGACAGCTGGGTTTTCTGGGGGCCAAAAGGTTCTACACACACGGCGGGGGAACCGGGCCTACTTGGTTGGACGAGGTGGACTGCAAGGGGACTGAGAAGAGTTTACTAATGTGCAAACATCCGGGAATCGGAGTTGAGAATTGCGATCACTGGAGGGATATTGGAATAGAATGTCACAGTCTGACAAAGTTGCTGTCAACAAAAGTTTACTGGAAGGGAATCGACTTTTCCGAATCCAAAAAGACTTCATCTCTTCAATACGTGGAGGTGTTCCAGGCCTACGAAGCAATAAAAGGCAGCGAAGTCATTCCTGACCTTGGCCACGTGACAGTAAAAAGCTCTGTATATGGAGTGAAGTCCGACAACATTACTTCTCCGCTGACCATTAGCAACAGCAGTGTCAGAGACAACCTGGTGGCGGGCATCCAGATAAAAGGCAAATCAAAGGCGATTAATATTAAGAACACGGCAGTGGATAACACAACATATGGAGACGGGTTTTCATATAGAGAAGCAGTGCCTGATCCAGTGGATTTTTGTTCTTCGGATGTGAATGTTACCAGATTTCCAGTCTTTTTTGAAGCGTTGGGTAAGACAAGAACGAATGTCGACTGCGCCAAGATTTTAAGAACTCAGCCAGGAAGCCGTTTAACCGTGTATTATCGATCCATGACTGGTGACAAGTTTGAGTTGGAGGTATTCGACGGTACCACAAGCAATGCGACGATGCTCACGTCATTGACCGAACGGACAGGTGTCAATCAGGCTGTCACGCCATCCTCAAGCTCTGGTCACGAACTCTACATAAGGTTTCGATTCAGTGCGGGCAGAAAAGATGCCAGGCTGAAATTCCTTATCACGGACGATCAAGACCATTTCCACTATGACGTAAATACGCAAAGACTTCTGGTAGTTGTATTTAAGTTCGCGGGAAATTTTGAATTATCATCAAGCCTGCTAGCCCAAGAAAATCGTGATGGAGATATTTCCTCTGTCGTGATATCCAACTGCACATTTAACGACAACCATGGAAACGGCGTACTCCTTAAAGGCATCATAGGAAAGACAAAGATTTCCTCAACTGCTGTCTTTCGCAATGAAGGTGAAGGCATGACTGTTCAGCAAATTTACGGAATGTTAACAGCTACCGATAGTCATTTTATTAACAACGGCGCAAACGGTCTTGAAATCTTAGACAGCAGTATCTTGTTATGTAATCTTTGTGAACTGTCTTCCAAAGGAAATGAACGCAATGGGTTGTATCTCCAGGATGTTGCTCTTGAAGGTGACGTTTCGGACTCAGCATTCGAAAACAACACGGAAAACGGATTTGCACTCACTAATGGTGCTGGCAAGGTTGAATTCCGAAGAATCGCTGCAGTTATGAACACACACAGTGGGGTTAAGATTTATGATGGCAAAGTGTCATCTAACTTCAGACTTTCTAATTTGTCAAACAACATAGAAGATGGTTGTTGCATATCAAACCAGGCGGGAACTCATGTGTTCTCTAATTGCACCGCAAATTCTAATTTGAGGCACGGTGTTAGTTTGGTTGACGGAAGGCCTCCCAACGGGAACGCGCTACCAAAATATCAATTCACGCACTTTAGTTTGGAAGAGAGCACAATAAATGACAATACCCAATACGGAGTCAGGCTGGGTCCTGACTGTCAGTGTTGGAGCGAGTCAGCGGTCAACGTTACCATGGCAATCAACAAGAATCAGATTGTGCAAAACACCAAAGGAGGCATCTTCTTGTCTCCAGGCTGGTGCACAGGGCGCTCAGACTCATTAAAACCGAGAAGAGTGGAGACTATCGTGACAAACAACCATTTGGAGAAAAACAAAGGTAATGCATTCTACGTCCACTGCACAGGCCTTTATGGCTTAGATGCGGTAATTGAAGCAAACACATTCACGAACAACACAGATAAAGTTCTGACTTTCATGGACCACACCTTCTGTTTTGCAAGCTACACAAGTAACCCCGTTAACGTGAAGATAGATAAAAACGTTTTCATAAAGAACCGTGCTGAACACGTTTTGTTTATCGACTTCATTTCCTTCCCAGAAACGCGTTTTGCTGTCGTAACAAACAATACTTTCCAAGACAATAAAGTCGCCACAAAAGACCTTTTTCCAAACTTTTTTCAACGCTCGACATCTCGTGCAGTTATTGTTCTTAAAGAAGGTAGTTTTACCTTGCGCGATAACATTTTGGAAAACTCCGGATTCCTTTTTCAGCTTTCTACTCTACGTCATGTTCACCGACGAGTTATTGACGCTAAATTCAACTGGTGGGGAACAACAAAGGAATGCGAAATCGTGGACAGAATCTTTGACTTCCAACACAGGGTTCAACTCTCTCCAGTTGAGTACTTCCCATACCTTCTTTCCGCAAACAAGACAAATGCAATTGACTCCAGTGATCCAAGACCATCCTGCTTTCTGAGAGGTTCAAGTATTGGTGGAATAGTGGATAGACCACTGGCCTTGTCGAGCGCTGGCTCGCCTTACGAAGTTCGAGATGACGTCATTATCCTGAGCAATGGGTCGTTGATCATACCAAAAAATGTGACGCTTCATTTCCCTTCCAGGTCAGCTATGGTTGTACAAGGAACGCTTCTTGTAGATGGAACTGAAAAGGAAAAGGTGAGATTTACGAAGAAGCAACATCAAGGAAGATTCCGTCTAGGTGGAGGACCCGGAGCGTGGGAAGGAAGAGTGGAATTTTTTATCAATGATACATGGTGGCCGATTTGTTTTCGTTACTGGAGATCGTTCACCGACGAGGCAAAAATCATTTGCCAGCAACTCGATCTTTACTATTACAGCTACAGTCTGCAGTACCCCTTTGCGCAGGAACCTGGCTTCGTGCACAACGTTGTATGCGATAGGAACATCGATAGTGATATAATGAATTGCAGTGCTGATACCTGGCGTTTTGAATCTACTTGTCGGGGATATACTGTGCTTGTCTACTGTCAGCATTACAATTGGGTCGGGCTTCATCTGACAGTGTCAAACCATAAAAGCTCGTTGCATCACCTGGAAATCCACGATGCTGGGTTTGCTTATCGCAGTGATATCCAAATTCCTGGTGCAGCTCTCAAAGTCGATTTGTACCATCATAATATAAGTAACGTATTCATTAACAATTCAGTGGGTATTGGCGTTCAAGTGGTATATCAGAGCTTGTGTCACAACTATTCCGTGATACCGCACTCTTTTGTATCACACACAAAATCCCACGGTGTTCTTTCACGATCACCTTCCCTTACACTTACAGACGCAAACTTCACAAGAAACGACGGCAATGGTTTTGTCTATGAATCTACCTGGGATAAACTTAACACTTTAACTGCCAAAATGGCCAGCCCAGATGTGTACAAAACTTTCCGCGTCTGCTCAATGAACAAAACGATTCTATTGGCCAACAAAGTGTTTCACTTTACTTTAGAGACATTGGAATATACTTCGCAGTTCAGGTGTCAGCATGTTATGGAGACAGAACCCGGTTACAAACTAGTCATTCAGGATCTGTATTGGTCTTCGCACAGTTTCTATGGTTTCTTGCACGTGTTTGATGGTGCTAACATATCAGTTGGTTCACCATGGAAGATGGAATCTTTACCGTGGAGAGATCGTCCTATCCTCAACTCGACCAAATCATCGGTTGCGTTTGATTTCTATAAGCGCCACAAATGGAATCTTGCTATTAACTTCTTGGTGTATACAGTGAAAGAGAATGAGCAACTTAACTACGTCGGTGGAGAGATCAACATAGCTCGATGCAAGATTATCGACAGTCACAAGGAAAGTGTCCTAATTGGAGGAAACTTGCTGAAATCTCTTACCATTACTGACACGGATATTACCAACTCTTGGGAATTCGGAATACAACTTTCGCCACGTGGTATCGAGGTCGTCAAGATCACTTCAGTAAAACTAGAAAAGAACAGGCAGGGTATTTCAATTAAAAAGATGTACTCGGGCTCCAAGGAATTTACGATTGAGAACTGTGCCATCAACGGATCGCGTTTTCGGGGCATTTACATTCACCCAGGTACCAAAAGCACAATCCGCATTGTAAACTCAAGTATTACAAACGGTGAAGACCGGGGTCTATATATCGAAGGCTACTATAGGGAAATGTCTCTAAGCTTGTTCGTCACTGGCAGTACATTCGCTTGGAACAAGAAGGGAGCCGTATTCTGTTTTAGGACTCATGGAAGAACGGTACCTGTCACCTTATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
M9NDE3	Protein bark beetle OS=Drosophila melanogaster OX=7227 GN=bark PE=1 SV=1
Q5RDA4	Galectin-3-binding protein OS=Pongo abelii OX=9601 GN=LGALS3BP PE=1 SV=1
Q08380	Galectin-3-binding protein OS=Homo sapiens OX=9606 GN=LGALS3BP PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000535 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13229 all species →	Beta_helix	Right handed beta helix region	Repeat	Interproscan
PF00530 all species →	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011050 all species →	Homologous_superfamily	Pectin lyase fold/virulence factor	Interproscan
IPR012334 all species →	Homologous_superfamily	Pectin lyase fold	Interproscan
IPR039448 all species →	Domain	Right handed beta helix domain	Interproscan
IPR001190 all species →	Domain	SRCR domain	Interproscan
IPR053243 all species →	Family	Septate junction maturation regulator	Interproscan
IPR036772 all species →	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR017448 all species →	Domain	SRCR-like domain	Interproscan
IPR006626 all species →	Repeat	Parallel beta-helix repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47653 all species →	PROTEIN BARK BEETLE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22144	TEME2; cell surface hyaluronidase	EC:3.2.1.35	Glycosaminoglycan binding proteins	ko00536	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.