Gene detail

Detailed information of evm.model.Ap10.2042 in Astrangia poculata

Genomic Location: Ap10:20920281...20950370
NR annotation: CAH3155059.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.2042

atgttgttactcatcgtatgcttcattttcgcgtgtcaagttaattcaaatcttctagatcccgctcttttaggacgagagttggagacctttgcaaacgacgctctcggcgtgaatgaaatgcagtttgaatttgaccgactccagttcagggaacacgcagtagatggagcaaccttgatagctgctgtcgccgataaagttggaagcaaattcaaagacagatttagcgtcgtgagaaaactgaagacagcggctgaagcttcgtacgctagatctcagtcctcctcgtcgcaatgggaatgctgcaaaacggaggatacgtccgacaacttggagtacgactccagatttcggcagaaagttgacttaagcaaaggatgcattgctatatcaggaagtgccccagctaaccgcagatacttggacgatacatttgtagaggaaatgaggaagatatttgctgatcatccgtttatcaagtggcaatactttggttctgaagaaggcgtactaacaaactttccagcttttcaattaagcgacgattgctcaggttatgatcctcgctttaggccatggtacgtggaaaccgccacgcctgaacccaatgacgtagttcttgttattgatactagtggatcaatgcgtggaagtcgcatcaacgtggcaaaagacgctgctttaacggttttgagtacattgaaccccagagacaggcaccacctcattaccatcgctgtttccaccaccacaagcattagagccatcactactagcactgccgtaaccatcattcccatgtgtcattaccatcatatcaccgtcattatcaaattatccatatcatcaccattattaccatgctacaatcattgctggaggtggattggccatgtcattcgaaaggaaaatgaatcaatcacaaagacagtactatactggacacccgaagggaggcgcaagcgtggcaggcccaagaatacatggggacgtacagtagagacagaattgaggggcttaaaccaaagctggaacaccatccaacagctggccaaagacagacagcagtggaagaactttgttgctgctctacgtgccaattggcataataggcacaccaattcaaaaactccaggaagtagcagaaatggtgggagattgtgctatagcgagggtctcgctgacgccactccaatcaatcttgaataccttaaagactacgtcagattgctttacgcaggaggaggaacctattacggaagggcctttagtaaagctttcgacttattgaaaggttcttcccttcaaaataccctcgcaagaaaaaaggtcatcctgtttctcactgatggccagccaagtgatgataagtcattaatcatgaatattatcaaagacaaaaacgcagagctgaataatagtgtcatgattatgacgtatggtatgttggtcaatgcgcagatactcctggacattgctaatcaagatggcacttcatacggagtccccaaggcgccctttgtgattcctggaaaatttacaagtatttcaaacccaaacaatttgcgcagtaccatggcaacctactacgacttcttttcaagaaattcagaaagcgacaaacctatcatctctattccttacgttgatgcctttggcggtggccttttaaccacagtttcactgccctgttattatgatggaaagttctttggtgtggttggtacagacctcagtatggaagaccttttgtcggagattacttattttcgagaaggtcaagcgagctatgctttcatggcggagagttctggtaggaccatgatgcacccacttctgccagccccttctaatgcaggtgacaaccctatttttatggacatcagggacctggagccggacccaactttcaactcagtggtgtttgactcaatgaaaagaggtggatcgggtaacgttacttttgtctcaaagcgctatgtggcccgcggaggtgaagtatctgagggagtgacggttgtcgagttagaatcgacttatttttggagaccagttgaagacacaaaatttacggtgggagttgtggtagctaccaatgacaaatcagagacgttgggaaggcaatcggttccttcagatttccagtttttatatcaccgtcttgacctgataaatcctacctccccatgtgtcaactttgcaagatatgcggcaaatgattccacggtggtgaaatttggcccggatgcctttgatgacccatacaggtatctcggtggcgaagagacagtgtcacaggtcaaagcttacaaagaatatatgaccggaaaaagagaagagaatcctggttttaaagatggcgtgagagacagtgttgtagcgaccaagaaggtggaagacatatggttcaaactgtcagtgaaatacagccagtatctggtctggcgctacgtggggactgctaatggtgtctttagattaacacctggagtaatactggcgaagcattatgatccgagtaaacgaccatggtaccacactgccctaagcaacacgggattggttgccctctccacgccttacatagacgcctttggtgcaggagtggtgataaccgctgcccacactatttaccgcggggaatcagaacacaaacatggaacaagcgatgaggtcataggagtgatgggagctgactttccactttcgtattttcaaaagttactcacagatacgtatcccctgtgtgaagattcaacatattcctgcttcgtgatcgacagagctggatttctaattatgcacgaagatttcctctcgccagacattacagcaaaaacactagaatacgtgcacatcacacagaaggagaaacacatagccgaagatcttttacagaatggatacatggtgaaaaaggaatgtcgaaacttggagaaaatcaaaacggagagattttacgagcttaaacttccattagaaggcgtgaacaccattaataacggacagcgctgtaagaaataccagctttctagaattgttggaagcaattcattcttgggaattatattactggaaagcgacgactgctcttcattgtcctgcccttgttcaagtaacagagagtgctctggtgtgcagggttcgtcttgccagtgcccatgttccacttggcttgatttccaatattgtacaacggaatttcctaaaagcaacgtttcaatttgtcctgtgccagcagctgttctgtcttctaaacaagtgaacgacccatcaactaaaggtctggaaaagtgttttgatccggaatgcgacaaaaagatggattccgattcatgcgatggagttgtgggctgttattggtgcgtgagggacaaacataacacgccactcagcaaacaatactgtgcggatattaacaaatgctatggtggcaaagaaggtactcgagcccctggtagcccttctcatgactctcccgcagtcgacgaaaaagatgataaagtatgctttgcgtttttattcaaagtcgatgcagatcttttagtcgatcctgcaaagataggaagagacaacatcgatcttctagctgcgaatttccatgaaagattcacgagaaggtttggtatcgcagagcgcctcaagaaggcagtagaggaagcgtactctaggacaaagaacacatcgccatggaaagaatgctgcaaggtcgacaaatcaaaactggtgtatgatgttcggtttcgttcaaaagtggacctaaacagtatctgcgtgaagatttctggtagtgcccctaaaaatccagctcacttggacagtggagtttttaaagagataaaagcaatctcggacgaacattcctttatcaagtggatctactttgcatcagaggaaggtgtaatgaccaactttccaacatatgacgaccccgtaaaatgtgacggatacgatccacgttttagaccgttttacgtggaaactgccacccctgaagccaaggacgtagtactggtgatggatacaagcaagtctatgggtgagaagttgaatgtcgctagagaggcagcaaaaacagttttggataccatgaacccaaaagaccatgttggcattgtatcatttgttgctgatgccaaaactccacaaagtgagaagtgctacagtgaaaagttagctctcgcaatcccgacaaatataagaaagttaaaggactttgttgataatctacacttttccagtggtccaaccaattttataccggctttaaagaaagcgttcgagttactgaaaggctccgcctttgaagactcggagaaaaacaagaaaagagtcattttatttctgacggatgggaatcctgatgattccaaaaagaccttgttcgagacgatacgaaaccggaacttggagcttaacaactcagtaatcattctaacatatggattcgacagaggataccaggatattctgatagatattgctcgccaaaacacttcaaaatacggtgtaccagcaaatacttccgttggagacatagcgcttggaagctacacttttgttgaagatatccttacgctgagaagtaaaatggcgacgtattatgacctgtttgcagagcaacttagtcgtcccgttgtgtctgtcccgtatgttgatgcttttggaacagggcttttggtgtccgtcaccctgccttgctatcaccaaggaaagttcattggtgtgacgggaactgatatcaatatcgaagaccttatgccagacataactgaattctataaacaagcatcttctaaagccgcatcaagaaaaaatggagggggtaaaggggaaatcccaaagacgcaacacaaaccccaaacatttcttgcctggcgtaaaggaaatgatggaagattcatctacagggggaaatgcgttggcaaagaataccagtacccggtttga

Transcript

evm.model.Ap10.2042

ATGTTGTTACTCATCGTATGCTTCATTTTCGCGTGTCAAGTTAATTCAAATCTTCTAGATCCCGCTCTTTTAGGACGAGAGTTGGAGACCTTTGCAAACGACGCTCTCGGCGTGAATGAAATGCAGTTTGAATTTGACCGACTCCAGTTCAGGGAACACGCAGTAGATGGAGCAACCTTGATAGCTGCTGTCGCCGATAAAGTTGGAAGCAAATTCAAAGACAGATTTAGCGTCGTGAGAAAACTGAAGACAGCGGCTGAAGCTTCGTACGCTAGATCTCAGTCCTCCTCGTCGCAATGGGAATGCTGCAAAACGGAGGATACGTCCGACAACTTGGAGTACGACTCCAGATTTCGGCAGAAAGTTGACTTAAGCAAAGGATGCATTGCTATATCAGGAAGTGCCCCAGCTAACCGCAGATACTTGGACGATACATTTGTAGAGGAAATGAGGAAGATATTTGCTGATCATCCGTTTATCAAGTGGCAATACTTTGGTTCTGAAGAAGGCGTACTAACAAACTTTCCAGCTTTTCAATTAAGCGACGATTGCTCAGGTTATGATCCTCGCTTTAGGCCATGGTACGTGGAAACCGCCACGCCTGAACCCAATGACGTAGTTCTTGTTATTGATACTAGTGGATCAATGCGTGGAAGTCGCATCAACGTGGCAAAAGACGCTGCTTTAACGGTTTTGAGTACATTGAACCCCAGAGACAGGCACCACCTCATTACCATCGCTGTTTCCACCACCACAAGCATTAGAGCCATCACTACTAGCACTGCCGTAACCATCATTCCCATGTGTCATTACCATCATATCACCGTCATTATCAAATTATCCATATCATCACCATTATTACCATGCTACAATCATTGCTGGAGGTGGATTGGCCATGTCATTCGAAAGGAAAATGAATCAATCACAAAGACAGTACTATACTGGACACCCGAAGGGAGGCGCAAGCGTGGCAGGCCCAAGAATACATGGGGACGTACAGTAGAGACAGAATTGAGGGGCTTAAACCAAAGCTGGAACACCATCCAACAGCTGGCCAAAGACAGACAGCAGTGGAAGAACTTTGTTGCTGCTCTACGTGCCAATTGGCATAATAGGCACACCAATTCAAAAACTCCAGGAAGTAGCAGAAATGGTGGGAGATTGTGCTATAGCGAGGGTCTCGCTGACGCCACTCCAATCAATCTTGAATACCTTAAAGACTACGTCAGATTGCTTTACGCAGGAGGAGGAACCTATTACGGAAGGGCCTTTAGTAAAGCTTTCGACTTATTGAAAGGTTCTTCCCTTCAAAATACCCTCGCAAGAAAAAAGGTCATCCTGTTTCTCACTGATGGCCAGCCAAGTGATGATAAGTCATTAATCATGAATATTATCAAAGACAAAAACGCAGAGCTGAATAATAGTGTCATGATTATGACGTATGGTATGTTGGTCAATGCGCAGATACTCCTGGACATTGCTAATCAAGATGGCACTTCATACGGAGTCCCCAAGGCGCCCTTTGTGATTCCTGGAAAATTTACAAGTATTTCAAACCCAAACAATTTGCGCAGTACCATGGCAACCTACTACGACTTCTTTTCAAGAAATTCAGAAAGCGACAAACCTATCATCTCTATTCCTTACGTTGATGCCTTTGGCGGTGGCCTTTTAACCACAGTTTCACTGCCCTGTTATTATGATGGAAAGTTCTTTGGTGTGGTTGGTACAGACCTCAGTATGGAAGACCTTTTGTCGGAGATTACTTATTTTCGAGAAGGTCAAGCGAGCTATGCTTTCATGGCGGAGAGTTCTGGTAGGACCATGATGCACCCACTTCTGCCAGCCCCTTCTAATGCAGGTGACAACCCTATTTTTATGGACATCAGGGACCTGGAGCCGGACCCAACTTTCAACTCAGTGGTGTTTGACTCAATGAAAAGAGGTGGATCGGGTAACGTTACTTTTGTCTCAAAGCGCTATGTGGCCCGCGGAGGTGAAGTATCTGAGGGAGTGACGGTTGTCGAGTTAGAATCGACTTATTTTTGGAGACCAGTTGAAGACACAAAATTTACGGTGGGAGTTGTGGTAGCTACCAATGACAAATCAGAGACGTTGGGAAGGCAATCGGTTCCTTCAGATTTCCAGTTTTTATATCACCGTCTTGACCTGATAAATCCTACCTCCCCATGTGTCAACTTTGCAAGATATGCGGCAAATGATTCCACGGTGGTGAAATTTGGCCCGGATGCCTTTGATGACCCATACAGGTATCTCGGTGGCGAAGAGACAGTGTCACAGGTCAAAGCTTACAAAGAATATATGACCGGAAAAAGAGAAGAGAATCCTGGTTTTAAAGATGGCGTGAGAGACAGTGTTGTAGCGACCAAGAAGGTGGAAGACATATGGTTCAAACTGTCAGTGAAATACAGCCAGTATCTGGTCTGGCGCTACGTGGGGACTGCTAATGGTGTCTTTAGATTAACACCTGGAGTAATACTGGCGAAGCATTATGATCCGAGTAAACGACCATGGTACCACACTGCCCTAAGCAACACGGGATTGGTTGCCCTCTCCACGCCTTACATAGACGCCTTTGGTGCAGGAGTGGTGATAACCGCTGCCCACACTATTTACCGCGGGGAATCAGAACACAAACATGGAACAAGCGATGAGGTCATAGGAGTGATGGGAGCTGACTTTCCACTTTCGTATTTTCAAAAGTTACTCACAGATACGTATCCCCTGTGTGAAGATTCAACATATTCCTGCTTCGTGATCGACAGAGCTGGATTTCTAATTATGCACGAAGATTTCCTCTCGCCAGACATTACAGCAAAAACACTAGAATACGTGCACATCACACAGAAGGAGAAACACATAGCCGAAGATCTTTTACAGAATGGATACATGGTGAAAAAGGAATGTCGAAACTTGGAGAAAATCAAAACGGAGAGATTTTACGAGCTTAAACTTCCATTAGAAGGCGTGAACACCATTAATAACGGACAGCGCTGTAAGAAATACCAGCTTTCTAGAATTGTTGGAAGCAATTCATTCTTGGGAATTATATTACTGGAAAGCGACGACTGCTCTTCATTGTCCTGCCCTTGTTCAAGTAACAGAGAGTGCTCTGGTGTGCAGGGTTCGTCTTGCCAGTGCCCATGTTCCACTTGGCTTGATTTCCAATATTGTACAACGGAATTTCCTAAAAGCAACGTTTCAATTTGTCCTGTGCCAGCAGCTGTTCTGTCTTCTAAACAAGTGAACGACCCATCAACTAAAGGTCTGGAAAAGTGTTTTGATCCGGAATGCGACAAAAAGATGGATTCCGATTCATGCGATGGAGTTGTGGGCTGTTATTGGTGCGTGAGGGACAAACATAACACGCCACTCAGCAAACAATACTGTGCGGATATTAACAAATGCTATGGTGGCAAAGAAGGTACTCGAGCCCCTGGTAGCCCTTCTCATGACTCTCCCGCAGTCGACGAAAAAGATGATAAAGTATGCTTTGCGTTTTTATTCAAAGTCGATGCAGATCTTTTAGTCGATCCTGCAAAGATAGGAAGAGACAACATCGATCTTCTAGCTGCGAATTTCCATGAAAGATTCACGAGAAGGTTTGGTATCGCAGAGCGCCTCAAGAAGGCAGTAGAGGAAGCGTACTCTAGGACAAAGAACACATCGCCATGGAAAGAATGCTGCAAGGTCGACAAATCAAAACTGGTGTATGATGTTCGGTTTCGTTCAAAAGTGGACCTAAACAGTATCTGCGTGAAGATTTCTGGTAGTGCCCCTAAAAATCCAGCTCACTTGGACAGTGGAGTTTTTAAAGAGATAAAAGCAATCTCGGACGAACATTCCTTTATCAAGTGGATCTACTTTGCATCAGAGGAAGGTGTAATGACCAACTTTCCAACATATGACGACCCCGTAAAATGTGACGGATACGATCCACGTTTTAGACCGTTTTACGTGGAAACTGCCACCCCTGAAGCCAAGGACGTAGTACTGGTGATGGATACAAGCAAGTCTATGGGTGAGAAGTTGAATGTCGCTAGAGAGGCAGCAAAAACAGTTTTGGATACCATGAACCCAAAAGACCATGTTGGCATTGTATCATTTGTTGCTGATGCCAAAACTCCACAAAGTGAGAAGTGCTACAGTGAAAAGTTAGCTCTCGCAATCCCGACAAATATAAGAAAGTTAAAGGACTTTGTTGATAATCTACACTTTTCCAGTGGTCCAACCAATTTTATACCGGCTTTAAAGAAAGCGTTCGAGTTACTGAAAGGCTCCGCCTTTGAAGACTCGGAGAAAAACAAGAAAAGAGTCATTTTATTTCTGACGGATGGGAATCCTGATGATTCCAAAAAGACCTTGTTCGAGACGATACGAAACCGGAACTTGGAGCTTAACAACTCAGTAATCATTCTAACATATGGATTCGACAGAGGATACCAGGATATTCTGATAGATATTGCTCGCCAAAACACTTCAAAATACGGTGTACCAGCAAATACTTCCGTTGGAGACATAGCGCTTGGAAGCTACACTTTTGTTGAAGATATCCTTACGCTGAGAAGTAAAATGGCGACGTATTATGACCTGTTTGCAGAGCAACTTAGTCGTCCCGTTGTGTCTGTCCCGTATGTTGATGCTTTTGGAACAGGGCTTTTGGTGTCCGTCACCCTGCCTTGCTATCACCAAGGAAAGTTCATTGGTGTGACGGGAACTGATATCAATATCGAAGACCTTATGCCAGACATAACTGAATTCTATAAACAAGCATCTTCTAAAGCCGCATCAAGAAAAAATGGAGGGGGTAAAGGGGAAATCCCAAAGACGCAACACAAACCCCAAACATTTCTTGCCTGGCGTAAAGGAAATGATGGAAGATTCATCTACAGGGGGAAATGCGTTGGCAAAGAATACCAGTACCCGGTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PDJ1	VWFA and cache domain-containing protein 1 OS=Mus musculus OX=10090 GN=Cachd1 PE=1 SV=1
Q5VU97	VWFA and cache domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CACHD1 PE=1 SV=2
Q5BI42	VWFA and cache domain-containing protein CG16868 OS=Drosophila melanogaster OX=7227 GN=CG16868 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000518 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13768 all species →	VWA_3	von Willebrand factor type A domain	Domain	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR029151 all species →	Homologous_superfamily	Periplasmic sensor-like domain superfamily	Interproscan
IPR051173 all species →	Family	Voltage-dependent calcium channel subunit alpha-2/delta	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10166 all species →	VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005245 all species →	Molecular Function	voltage-gated calcium channel activity	Interproscan
GO:0005891 all species →	Cellular Component	voltage-gated calcium channel complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04860	CACNA2D3; voltage-dependent calcium channel alpha-2/delta-3	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.