Genomic Location: Ap10:20932554...20950370
NR annotation: XP_020606115.1, VWFA and cache domain-containing protein 1-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap10.2042.1.5f15df50 |
| Transcript |
| evm.model.Ap10.2042.1.5f15df50 |
| Protein |
| evm.model.Ap10.2042.1.5f15df50 |
| UniProt accession | Description |
|---|---|
| Q6PDJ1 | VWFA and cache domain-containing protein 1 OS=Mus musculus OX=10090 GN=Cachd1 PE=1 SV=1 |
| Q5VU97 | VWFA and cache domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CACHD1 PE=1 SV=2 |
| Q5BI42 | VWFA and cache domain-containing protein CG16868 OS=Drosophila melanogaster OX=7227 GN=CG16868 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000518 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13519 all species → | VWA_2 | von Willebrand factor type A domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036465 all species → | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| IPR029151 all species → | Homologous_superfamily | Periplasmic sensor-like domain superfamily | Interproscan |
| IPR002035 all species → | Domain | von Willebrand factor, type A | Interproscan |
| IPR051173 all species → | Family | Voltage-dependent calcium channel subunit alpha-2/delta | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10166 all species → | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005245 all species → | Molecular Function | voltage-gated calcium channel activity | Interproscan |
| GO:0005891 all species → | Cellular Component | voltage-gated calcium channel complex | Interproscan |
evm.model.Ap10.2042.1.5f15df50.Transcript abundance of evm.model.Ap10.2042.1.5f15df50 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
