Gene detail

Detailed information of evm.model.Ap10.2045 in Astrangia poculata

Genomic Location: Ap10:20974184...20994193
NR annotation: CAH3155059.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.2045

atggcgaaatcgtttgatccaagaaaggaccatggtaagtatctgaaagggtaccactcggcgttaagcaacacgggaaaggttgccctctccacgccttacatagacgccgcgggaacaggagtggtgatagctgctgcccatactatttaccgtggagaaataaacagccaacatacaataaatgatcaagttattggagtcatgggtgcggactttcctttatcatacttccaaaaactcctaacagatacatatccaaagtgcaaagaaagcaactatgactgtttcgtgttagatggtgcgggatttctgatcatgcacgatgattttctagtacatgacataacagctaaaaaactggaatatatccacataaccgaaaaggaaaaagacattgctaaggatcttttacaaaaaggatatttagtgaaaaaggaatgccgcaacttggagaaaatcaagctacagagcttttacgagttaaagatccccgagttacaaggcgtaaatacccttgatagtggagaccgatgcaagaagtatcagctttttagtgtgggtcgaagcaatgcctttttaggaatcatatcacgtgacagttcttgttacttcaagtcttgcacgtgcaccaataacaaagaatgttccaatgtgcagggtttgacctgccagtgcccatgcacctcgccacttgagttccattactgtagaagcgagtttccagctagcaatatttctatttgccctgtgccagcccctgtcgtcctctctgaagaagtcaatgatccttctgtcactggcttagataaatgttttgacccacaatgcaagaaaaagacagattcaggatcatgtgatggagtcgtgggatgctattggtgcgttagagacaagcacaacgctccactttccaaggaatactgcgctgatatcaattcctgttatggtggaaaagaaggtttactttatacagtgcttgctactctatacagtaactttggagagaaggtgatattcgacaattattcttcgaaatcgcgaaatgacttcgaacaaatcttggttaccaacataaaacgcgggatatctgttatgtacgggaaaaagtgctcctggaagaaaggtattccgaacgacgcgaacgatgatgatgatgaggatgacgcaagggagggatattgggatccatcgctggagcattttgacaagttacagtttactgagactgcagtagacggcagttccatcatccgcactgtggcagcgagtgtttcaggcaagttcaaagatcgatttctcgttgtacaaaaacttaaagaagccgtcgaatcctcttggcccatgtctcctacaacaaacccaacggaatgttgtcacatatcgagctggtcaagtggccaagagtacgattcaagatttggcaaaacagttgacttttcacgtgtatgtgtgaaaatacctgatggtgctcagtcctcaagaaaacatgtcgctgattctgtggtggagaagatgaaagatatgatgaaaaatcatccatttataaaatggcaatactttgcatcagaggacggcacttacacgaattttccagcgtttgaggatattaaggcagactgcagatcttatgatcctcgtttcagaccattttacgtggagacagccacaccagacccgaaagatgttgttcttgtttttgacagaagtgaatcgatgcatttcggagatagaataaaggtggccaaggaggctgctaaaacatttctcagtacgttgaaccccaacgatagaattggattggtaaaattcaaccacgtagctgaaacaaaatttgggtgtcagagcacacgcttggcggatgctacaccaataaacataaaatacatgaaaggctacgttgattggattaaagcttcagggggtacttactatttaaaagcatttacgcgggccttcgatttgttgaagggtacaccggctgaaaaagatccctctaggagaaaggtcattgtctttttaaccgatggtaaaccgaaggagtctgcgaaagacatcatgcagacgataaaaagaaagaacgcagagctaaacaatacagtcgtaataatgacatatgggatgatgtcagaggacttggacttgcaaatacttcgagacattgctgaacaaaatggaaccctgtatggagtaccaaaagcacctgacatcattgctggaaggtttacttgtgtacaacacaattattaccttgaaaataaattggcaacgtattacgaattcttctcaacaagaactgttcgcgatgaaccaatcatctccattccatacaatgacacctttggaacgggtctgataacatccataacactgccttgttatcaccaaggtaaattcattggtgttgttggtacagaccttagcatggaagaccttctttctgaaatcacctactttcagagaggacagtcaagttatgctttcatggcggacagctccggaaggaccatgatgcatcctctcctgccagccccttctgacgcttattgggatccgattgttatggacatcacggccttagaacctgaaccggagttttatcccatacttgaatctattaaaaaatatcaagaagaagatgatgatgatgatgatgatgatgatgatgacgatgatgatgatgatgatgatgacgctgattataattatagttacgacaatgttgataatatatacatttcgccgataaaagttgaagacacaaattttaccgttggaatcgtgatagcagttggcgataaggacgaaaaccttggaagtcagtctattcctccagaatcggcaattgtgaagtttggtgccgaagcctttcaagatccatacacctatcttggattggatgagactgtatctcttgtcaacgcctacaaaagttttatgacaggtgcaagcccacacaatcctggattcaaacatggcattcgggacacagttgtcgccacaggaaaggtcgaggacatttggcttcgagaaaagaaagactacacaaactatttggtacggagatattttggcaccgcaaatggtgtgttcagaatgacgcccgggacctcaattgcgaaatcgtttgatccaagaaaaagaccatggtacctttcagcgttaagcaacacgggaaaggttgccctctccacgccttacatagacgccttaggatcaggagtggtgatagctgctgcccatactatttaccgcggccaagaaaccggcgaacatactgagaatgataaagttattggagtcatgggtgcggactttcctttatcatacttccaaaaacttttgacagacacatatccaaagtgcaatgaaaacaactatgattgttttgtgttggatggtgcgggatttctgatcatgcacgatgatttccttgtacctgacatacgaccttataacctggaatatgtccacatcactgaaaaggaaaaatacattgctgaggatcttttacaaaaaggatatttagtgaaaaaggaatgccgcaacttggagaaaatcaaactagagagcttttacgagcttaaggttccacgacaaggcgtgaatacgcttgatagcggagacctttgtaagtaccagctttctagcgtggcgggaagcaacgcgtttttgggaatcatatcacgtgacagttcctgctactccaagtcttgcacgtgttccggaagcaattattgtgtctatgtgcagggtttgacctgcgagtgcccatgctactcgtggcttgacttccattattgtagaagcgagttcccacccagcaatatttctatttgtcctgtaccagccactgtcgtccgatctgaaaaagccaatgatccttcaataagcggtctacaaacatgtgttgacccacaatgcaagaataagacagattcagggtcatgtgacggagtcgtgggatgctattggtgcgttagagacaagcacaacgctccactttctaaggaatactgcgctgatatcaattcctgttatggtggaaaagaaggcgcaagtgctcctgggaacggcagtcctccgaccgacaccgacgacaaggatgatgatgatgataagggcaaacggtcgcatggagttaatgataaaaagaacagactgtcgggcgaaagtgctcctgggaacggtagtcctccgaccgacaccgacgacaatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgacggaatgtcgggtatagctcttcagggacctattcaagggtcaatatcgggtcttattgtaatcatcgttattatttggatcttctataaggtccgatgcaagaaaagacggatacgtcgaaatagtcagcccgccacctaa

Transcript

evm.model.Ap10.2045

ATGGCGAAATCGTTTGATCCAAGAAAGGACCATGGTAAGTATCTGAAAGGGTACCACTCGGCGTTAAGCAACACGGGAAAGGTTGCCCTCTCCACGCCTTACATAGACGCCGCGGGAACAGGAGTGGTGATAGCTGCTGCCCATACTATTTACCGTGGAGAAATAAACAGCCAACATACAATAAATGATCAAGTTATTGGAGTCATGGGTGCGGACTTTCCTTTATCATACTTCCAAAAACTCCTAACAGATACATATCCAAAGTGCAAAGAAAGCAACTATGACTGTTTCGTGTTAGATGGTGCGGGATTTCTGATCATGCACGATGATTTTCTAGTACATGACATAACAGCTAAAAAACTGGAATATATCCACATAACCGAAAAGGAAAAAGACATTGCTAAGGATCTTTTACAAAAAGGATATTTAGTGAAAAAGGAATGCCGCAACTTGGAGAAAATCAAGCTACAGAGCTTTTACGAGTTAAAGATCCCCGAGTTACAAGGCGTAAATACCCTTGATAGTGGAGACCGATGCAAGAAGTATCAGCTTTTTAGTGTGGGTCGAAGCAATGCCTTTTTAGGAATCATATCACGTGACAGTTCTTGTTACTTCAAGTCTTGCACGTGCACCAATAACAAAGAATGTTCCAATGTGCAGGGTTTGACCTGCCAGTGCCCATGCACCTCGCCACTTGAGTTCCATTACTGTAGAAGCGAGTTTCCAGCTAGCAATATTTCTATTTGCCCTGTGCCAGCCCCTGTCGTCCTCTCTGAAGAAGTCAATGATCCTTCTGTCACTGGCTTAGATAAATGTTTTGACCCACAATGCAAGAAAAAGACAGATTCAGGATCATGTGATGGAGTCGTGGGATGCTATTGGTGCGTTAGAGACAAGCACAACGCTCCACTTTCCAAGGAATACTGCGCTGATATCAATTCCTGTTATGGTGGAAAAGAAGGTTTACTTTATACAGTGCTTGCTACTCTATACAGTAACTTTGGAGAGAAGGTGATATTCGACAATTATTCTTCGAAATCGCGAAATGACTTCGAACAAATCTTGGTTACCAACATAAAACGCGGGATATCTGTTATGTACGGGAAAAAGTGCTCCTGGAAGAAAGGTATTCCGAACGACGCGAACGATGATGATGATGAGGATGACGCAAGGGAGGGATATTGGGATCCATCGCTGGAGCATTTTGACAAGTTACAGTTTACTGAGACTGCAGTAGACGGCAGTTCCATCATCCGCACTGTGGCAGCGAGTGTTTCAGGCAAGTTCAAAGATCGATTTCTCGTTGTACAAAAACTTAAAGAAGCCGTCGAATCCTCTTGGCCCATGTCTCCTACAACAAACCCAACGGAATGTTGTCACATATCGAGCTGGTCAAGTGGCCAAGAGTACGATTCAAGATTTGGCAAAACAGTTGACTTTTCACGTGTATGTGTGAAAATACCTGATGGTGCTCAGTCCTCAAGAAAACATGTCGCTGATTCTGTGGTGGAGAAGATGAAAGATATGATGAAAAATCATCCATTTATAAAATGGCAATACTTTGCATCAGAGGACGGCACTTACACGAATTTTCCAGCGTTTGAGGATATTAAGGCAGACTGCAGATCTTATGATCCTCGTTTCAGACCATTTTACGTGGAGACAGCCACACCAGACCCGAAAGATGTTGTTCTTGTTTTTGACAGAAGTGAATCGATGCATTTCGGAGATAGAATAAAGGTGGCCAAGGAGGCTGCTAAAACATTTCTCAGTACGTTGAACCCCAACGATAGAATTGGATTGGTAAAATTCAACCACGTAGCTGAAACAAAATTTGGGTGTCAGAGCACACGCTTGGCGGATGCTACACCAATAAACATAAAATACATGAAAGGCTACGTTGATTGGATTAAAGCTTCAGGGGGTACTTACTATTTAAAAGCATTTACGCGGGCCTTCGATTTGTTGAAGGGTACACCGGCTGAAAAAGATCCCTCTAGGAGAAAGGTCATTGTCTTTTTAACCGATGGTAAACCGAAGGAGTCTGCGAAAGACATCATGCAGACGATAAAAAGAAAGAACGCAGAGCTAAACAATACAGTCGTAATAATGACATATGGGATGATGTCAGAGGACTTGGACTTGCAAATACTTCGAGACATTGCTGAACAAAATGGAACCCTGTATGGAGTACCAAAAGCACCTGACATCATTGCTGGAAGGTTTACTTGTGTACAACACAATTATTACCTTGAAAATAAATTGGCAACGTATTACGAATTCTTCTCAACAAGAACTGTTCGCGATGAACCAATCATCTCCATTCCATACAATGACACCTTTGGAACGGGTCTGATAACATCCATAACACTGCCTTGTTATCACCAAGGTAAATTCATTGGTGTTGTTGGTACAGACCTTAGCATGGAAGACCTTCTTTCTGAAATCACCTACTTTCAGAGAGGACAGTCAAGTTATGCTTTCATGGCGGACAGCTCCGGAAGGACCATGATGCATCCTCTCCTGCCAGCCCCTTCTGACGCTTATTGGGATCCGATTGTTATGGACATCACGGCCTTAGAACCTGAACCGGAGTTTTATCCCATACTTGAATCTATTAAAAAATATCAAGAAGAAGATGATGATGATGATGATGATGATGATGATGACGATGATGATGATGATGATGATGACGCTGATTATAATTATAGTTACGACAATGTTGATAATATATACATTTCGCCGATAAAAGTTGAAGACACAAATTTTACCGTTGGAATCGTGATAGCAGTTGGCGATAAGGACGAAAACCTTGGAAGTCAGTCTATTCCTCCAGAATCGGCAATTGTGAAGTTTGGTGCCGAAGCCTTTCAAGATCCATACACCTATCTTGGATTGGATGAGACTGTATCTCTTGTCAACGCCTACAAAAGTTTTATGACAGGTGCAAGCCCACACAATCCTGGATTCAAACATGGCATTCGGGACACAGTTGTCGCCACAGGAAAGGTCGAGGACATTTGGCTTCGAGAAAAGAAAGACTACACAAACTATTTGGTACGGAGATATTTTGGCACCGCAAATGGTGTGTTCAGAATGACGCCCGGGACCTCAATTGCGAAATCGTTTGATCCAAGAAAAAGACCATGGTACCTTTCAGCGTTAAGCAACACGGGAAAGGTTGCCCTCTCCACGCCTTACATAGACGCCTTAGGATCAGGAGTGGTGATAGCTGCTGCCCATACTATTTACCGCGGCCAAGAAACCGGCGAACATACTGAGAATGATAAAGTTATTGGAGTCATGGGTGCGGACTTTCCTTTATCATACTTCCAAAAACTTTTGACAGACACATATCCAAAGTGCAATGAAAACAACTATGATTGTTTTGTGTTGGATGGTGCGGGATTTCTGATCATGCACGATGATTTCCTTGTACCTGACATACGACCTTATAACCTGGAATATGTCCACATCACTGAAAAGGAAAAATACATTGCTGAGGATCTTTTACAAAAAGGATATTTAGTGAAAAAGGAATGCCGCAACTTGGAGAAAATCAAACTAGAGAGCTTTTACGAGCTTAAGGTTCCACGACAAGGCGTGAATACGCTTGATAGCGGAGACCTTTGTAAGTACCAGCTTTCTAGCGTGGCGGGAAGCAACGCGTTTTTGGGAATCATATCACGTGACAGTTCCTGCTACTCCAAGTCTTGCACGTGTTCCGGAAGCAATTATTGTGTCTATGTGCAGGGTTTGACCTGCGAGTGCCCATGCTACTCGTGGCTTGACTTCCATTATTGTAGAAGCGAGTTCCCACCCAGCAATATTTCTATTTGTCCTGTACCAGCCACTGTCGTCCGATCTGAAAAAGCCAATGATCCTTCAATAAGCGGTCTACAAACATGTGTTGACCCACAATGCAAGAATAAGACAGATTCAGGGTCATGTGACGGAGTCGTGGGATGCTATTGGTGCGTTAGAGACAAGCACAACGCTCCACTTTCTAAGGAATACTGCGCTGATATCAATTCCTGTTATGGTGGAAAAGAAGGCGCAAGTGCTCCTGGGAACGGCAGTCCTCCGACCGACACCGACGACAAGGATGATGATGATGATAAGGGCAAACGGTCGCATGGAGTTAATGATAAAAAGAACAGACTGTCGGGCGAAAGTGCTCCTGGGAACGGTAGTCCTCCGACCGACACCGACGACAATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGACGGAATGTCGGGTATAGCTCTTCAGGGACCTATTCAAGGGTCAATATCGGGTCTTATTGTAATCATCGTTATTATTTGGATCTTCTATAAGGTCCGATGCAAGAAAAGACGGATACGTCGAAATAGTCAGCCCGCCACCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PDJ1	VWFA and cache domain-containing protein 1 OS=Mus musculus OX=10090 GN=Cachd1 PE=1 SV=1
Q5VU97	VWFA and cache domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CACHD1 PE=1 SV=2
Q5BI42	VWFA and cache domain-containing protein CG16868 OS=Drosophila melanogaster OX=7227 GN=CG16868 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000518 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13519 all species →	VWA_2	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051173 all species →	Family	Voltage-dependent calcium channel subunit alpha-2/delta	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR029151 all species →	Homologous_superfamily	Periplasmic sensor-like domain superfamily	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10166 all species →	VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005245 all species →	Molecular Function	voltage-gated calcium channel activity	Interproscan
GO:0005891 all species →	Cellular Component	voltage-gated calcium channel complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap10.2045.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.