Gene detail

Detailed information of evm.model.Ap10.2048 in Astrangia poculata

Genomic Location: Ap10:21025492...21033497
NR annotation: KAJ7382923.1, Carnitine O-palmitoyltransferase 2, mitochondrial [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.2048

atgattattgcaagagttgttttatcgaaaggaagcgcagctagaaccggcgttaagggttctgtatattttctttccccgtctggagtgactgcaaaacggcgtcaaagcagatgctacagcagttcaagttcagaggatcataagtacattgaacccaagaccaaagttcacacttttcattttcaagacagtcttccaagactaccaattccaaaacttgaggatacatgtcagaggtatcttgatgcacagaaaccgttattaactcctgaacaatatgaaaacaccaaacgtcttgttgacaagtttcaaaagcgtgaggccccaggtcttaatgctgagctggtgcagaaaaacaagagcaacaaacacactagttacatagcaggtccctggtacgacatgtatctatcagcccgggagtcaattgtcctgaactacaatccgtttatgatgtttaaagatgatccaacagaagaaaataatgatcaggtagtcagagccactaacatgataaagtcagccatgaggtttaaattatcattagatgaaacacttcttgaaccagatgtttatcatttaaagccgcaaatgagtgatacacagtggtttaggaatgtcattaggtttgttcccaggcagctgtcgtggtacggtgcatttctagtaaaagcttttccacttgacatgagtcaatatgccaggctgttcaattcaacacggattccggagctgaagaaagacaggctagctacattcgagagtggacgtcatatgcttgtaatgaggaatggaaatttttacgtctttgatacaattacaactgatggtcacattgttccaactgcaacgatttatcaaaatctgaagtatattgtagacgacccgacccctcccaccaacttcccagtcgccgctctgacgtcagaaaatcgtgacacgtgggcgaacctgcgtcacgcgcttgaagccattcctggtaacgaggaagtcctgagattgattgacagcgctgtgtttgttctttgcttggatgatcacgatgttaacagtgtagcggatgttacgagaacgtttctacatggcgacggaaaaaacaggtggtttgacaagtcattccagttgatcatttgtaaggacggaaaagcagcggtgaattttgagcatgcctggggagatggcgttgccgttttgcgtttctttaatgaggtattcaaagacaccaccacccgccctgcatgcactccagccagcgctcaaaacttcagcgccgagacaaccgtgagaaaacttgatttcaatttaaacccggaaatagagaggagaatcaacgcggcaaaggaaaagtttgacaatacggtgaagggattagacatcgctgaactgcaagttcacacgtatggcaaaaattacatcaagagtaagaacctcagtccagatgcaatcatgcagttggcttttcagatggctatctttcgtcaaaacggcaagtttgttcctacatacgagtcctgcagcacggcggcgtttaagcacgggcgaacagagacaatcagaccagcgtctaacgccactgtagcatgcgcagaagctttccaaaagtcgcaccgcgcgggagtggaagagatgacggacagaatcagacgagctgctgactggcattcaaaactcaccaaagaagccgccatgggccaaggtttcgatcggcatctcttcgcgctgcgcctcttggcggagtccagtggtaaagtcccggatgtcttccaagacccggcttacaaacaaatcaatcacatcattctatccaccagcacactgtctagtcccgcactgatgcttgggggattcggtccggtagtgcgggacgggttcggagtgggatacgggatccaagatgattggttgggatgtaacgtgacgagctacccgcctgatagagatgtacgaggctttttagaatgtgttcgacacagcttagaagatatttattgcgttctagaaggaaaaaatttcaagcgatga

Transcript

evm.model.Ap10.2048

ATGATTATTGCAAGAGTTGTTTTATCGAAAGGAAGCGCAGCTAGAACCGGCGTTAAGGGTTCTGTATATTTTCTTTCCCCGTCTGGAGTGACTGCAAAACGGCGTCAAAGCAGATGCTACAGCAGTTCAAGTTCAGAGGATCATAAGTACATTGAACCCAAGACCAAAGTTCACACTTTTCATTTTCAAGACAGTCTTCCAAGACTACCAATTCCAAAACTTGAGGATACATGTCAGAGGTATCTTGATGCACAGAAACCGTTATTAACTCCTGAACAATATGAAAACACCAAACGTCTTGTTGACAAGTTTCAAAAGCGTGAGGCCCCAGGTCTTAATGCTGAGCTGGTGCAGAAAAACAAGAGCAACAAACACACTAGTTACATAGCAGGTCCCTGGTACGACATGTATCTATCAGCCCGGGAGTCAATTGTCCTGAACTACAATCCGTTTATGATGTTTAAAGATGATCCAACAGAAGAAAATAATGATCAGGTAGTCAGAGCCACTAACATGATAAAGTCAGCCATGAGGTTTAAATTATCATTAGATGAAACACTTCTTGAACCAGATGTTTATCATTTAAAGCCGCAAATGAGTGATACACAGTGGTTTAGGAATGTCATTAGGTTTGTTCCCAGGCAGCTGTCGTGGTACGGTGCATTTCTAGTAAAAGCTTTTCCACTTGACATGAGTCAATATGCCAGGCTGTTCAATTCAACACGGATTCCGGAGCTGAAGAAAGACAGGCTAGCTACATTCGAGAGTGGACGTCATATGCTTGTAATGAGGAATGGAAATTTTTACGTCTTTGATACAATTACAACTGATGGTCACATTGTTCCAACTGCAACGATTTATCAAAATCTGAAGTATATTGTAGACGACCCGACCCCTCCCACCAACTTCCCAGTCGCCGCTCTGACGTCAGAAAATCGTGACACGTGGGCGAACCTGCGTCACGCGCTTGAAGCCATTCCTGGTAACGAGGAAGTCCTGAGATTGATTGACAGCGCTGTGTTTGTTCTTTGCTTGGATGATCACGATGTTAACAGTGTAGCGGATGTTACGAGAACGTTTCTACATGGCGACGGAAAAAACAGGTGGTTTGACAAGTCATTCCAGTTGATCATTTGTAAGGACGGAAAAGCAGCGGTGAATTTTGAGCATGCCTGGGGAGATGGCGTTGCCGTTTTGCGTTTCTTTAATGAGGTATTCAAAGACACCACCACCCGCCCTGCATGCACTCCAGCCAGCGCTCAAAACTTCAGCGCCGAGACAACCGTGAGAAAACTTGATTTCAATTTAAACCCGGAAATAGAGAGGAGAATCAACGCGGCAAAGGAAAAGTTTGACAATACGGTGAAGGGATTAGACATCGCTGAACTGCAAGTTCACACGTATGGCAAAAATTACATCAAGAGTAAGAACCTCAGTCCAGATGCAATCATGCAGTTGGCTTTTCAGATGGCTATCTTTCGTCAAAACGGCAAGTTTGTTCCTACATACGAGTCCTGCAGCACGGCGGCGTTTAAGCACGGGCGAACAGAGACAATCAGACCAGCGTCTAACGCCACTGTAGCATGCGCAGAAGCTTTCCAAAAGTCGCACCGCGCGGGAGTGGAAGAGATGACGGACAGAATCAGACGAGCTGCTGACTGGCATTCAAAACTCACCAAAGAAGCCGCCATGGGCCAAGGTTTCGATCGGCATCTCTTCGCGCTGCGCCTCTTGGCGGAGTCCAGTGGTAAAGTCCCGGATGTCTTCCAAGACCCGGCTTACAAACAAATCAATCACATCATTCTATCCACCAGCACACTGTCTAGTCCCGCACTGATGCTTGGGGGATTCGGTCCGGTAGTGCGGGACGGGTTCGGAGTGGGATACGGGATCCAAGATGATTGGTTGGGATGTAACGTGACGAGCTACCCGCCTGATAGAGATGTACGAGGCTTTTTAGAATGTGTTCGACACAGCTTAGAAGATATTTATTGCGTTCTAGAAGGAAAAAATTTCAAGCGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q60HG9	Carnitine O-palmitoyltransferase 2, mitochondrial OS=Macaca fascicularis OX=9541 GN=CPT2 PE=2 SV=1
P23786	Carnitine O-palmitoyltransferase 2, mitochondrial OS=Homo sapiens OX=9606 GN=CPT2 PE=1 SV=2
Q5U3U3	Carnitine O-palmitoyltransferase 2, mitochondrial OS=Danio rerio OX=7955 GN=cpt2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003519 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00755 all species →	Carn_acyltransf	Choline/Carnitine o-acyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000542 all species →	Family	Acyltransferase ChoActase/COT/CPT	Interproscan
IPR039551 all species →	Domain	Choline/carnitine acyltransferase domain	Interproscan
IPR042572 all species →	Homologous_superfamily	Carnitine o-acyltransferase, N-terminal	Interproscan
IPR023213 all species →	Homologous_superfamily	Chloramphenicol acetyltransferase-like domain superfamily	Interproscan
IPR042231 all species →	Homologous_superfamily	Choline/Carnitine o-acyltransferase, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22589 all species →	CARNITINE O-ACYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0004095 all species →	Molecular Function	carnitine O-palmitoyltransferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006635 all species →	Biological Process	fatty acid beta-oxidation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08766	CPT2; carnitine O-palmitoyltransferase 2	EC:2.3.1.21	Diabetic cardiomyopathy	ko05415	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.