Genomic Location: Ap10:21371826...21375421
NR annotation: XP_020628432.1, alpha-amylase 2-like isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap10.2090 |
| Transcript |
| evm.model.Ap10.2090 |
| Protein |
| evm.model.Ap10.2090 |
| UniProt accession | Description |
|---|---|
| Q09840 | Alpha-amylase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=aah2 PE=1 SV=1 |
| Q02906 | Alpha-amylase B OS=Aspergillus awamori OX=105351 GN=amyB PE=3 SV=1 |
| Q02905 | Alpha-amylase A OS=Aspergillus awamori OX=105351 GN=amyA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010134 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF09260 all species → | A_amylase_dom_C | Alpha-amylase, domain C | Domain | Interproscan |
| PF00128 all species → | Alpha-amylase | Alpha amylase, catalytic domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015340 all species → | Domain | Alpha-amylase, domain C | Interproscan |
| IPR013780 all species → | Homologous_superfamily | Glycosyl hydrolase, all-beta | Interproscan |
| IPR006047 all species → | Domain | Glycosyl hydrolase, family 13, catalytic domain | Interproscan |
| IPR013777 all species → | Family | Alpha-amylase-like | Interproscan |
| IPR017853 all species → | Homologous_superfamily | Glycoside hydrolase superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10357 all species → | ALPHA-AMYLASE FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004556 all species → | Molecular Function | alpha-amylase activity | Interproscan |
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0016052 all species → | Biological Process | carbohydrate catabolic process | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
evm.model.Ap10.2090.Transcript abundance of evm.model.Ap10.2090 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
