Genomic Location: Ap10:2620344...2627702
NR annotation: XP_022796527.1, pre-mRNA-splicing factor ISY1 homolog [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap10.267 |
| Transcript |
| evm.model.Ap10.267 |
| Protein |
| evm.model.Ap10.267 |
| UniProt accession | Description |
|---|---|
| Q6AYB3 | Pre-mRNA-splicing factor ISY1 homolog OS=Rattus norvegicus OX=10116 GN=Isy1 PE=2 SV=1 |
| Q69ZQ2 | Pre-mRNA-splicing factor ISY1 homolog OS=Mus musculus OX=10090 GN=Isy1 PE=1 SV=2 |
| Q9ULR0 | Pre-mRNA-splicing factor ISY1 homolog OS=Homo sapiens OX=9606 GN=ISY1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007253 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF06246 all species → | Isy1 | Isy1-like splicing family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037200 all species → | Homologous_superfamily | Pre-mRNA-splicing factor Isy1 superfamily | Interproscan |
| IPR009360 all species → | Family | Pre-mRNA-splicing factor Isy1 | Interproscan |
| IPR029012 all species → | Homologous_superfamily | Helix hairpin bin domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13021 all species → | PRE-MRNA-SPLICING FACTOR ISY1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000350 all species → | Biological Process | generation of catalytic spliceosome for second transesterification step | Interproscan |
| GO:0000389 all species → | Biological Process | mRNA 3'-splice site recognition | Interproscan |
| GO:0000974 all species → | Cellular Component | Prp19 complex | Interproscan |
| GO:0071013 all species → | Cellular Component | catalytic step 2 spliceosome | Interproscan |
| GO:0071014 all species → | Cellular Component | post-mRNA release spliceosomal complex | Interproscan |
| GO:0071020 all species → | Cellular Component | post-spliceosomal complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12870 | ISY1; pre-mRNA-splicing factor ISY1 | - | Spliceosome | ko03041 | deepkoala |
Transcript abundance of evm.model.Ap10.267 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
