Gene detail

Detailed information of evm.model.Ap10.328 in Astrangia poculata

Genomic Location: Ap10:3410477...3414521
NR annotation: KAJ7331247.1, 60S ribosomal protein L18A [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3T003	Large ribosomal subunit protein eL20 OS=Bos taurus OX=9913 GN=RPL18A PE=1 SV=1
Q02543	Large ribosomal subunit protein eL20 OS=Homo sapiens OX=9606 GN=RPL18A PE=1 SV=2
G1TTY7	Large ribosomal subunit protein eL20 OS=Oryctolagus cuniculus OX=9986 GN=RPL18A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007316 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01775 all species →	Ribosomal_L18A	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028877 all species →	Family	Large ribosomal subunit protein eL20	Interproscan
IPR021138 all species →	Family	Large ribosomal subunit protein eL20, eukaryotes	Interproscan
IPR023573 all species →	Domain	Large ribosomal subunit protein eL20 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10052 all species →	60S RIBOSOMAL PROTEIN L18A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02882	RP-L18Ae, RPL18A; large subunit ribosomal protein L18Ae	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.