Genomic Location: Ap10:4058068...4063417
NR annotation: XP_020631585.1, glucose-repressible alcohol dehydrogenase transcriptional effector-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap10.386 |
| Transcript |
| evm.model.Ap10.386 |
| Protein |
| evm.model.Ap10.386 |
| UniProt accession | Description |
|---|---|
| P31384 | CCR4-Not complex 3'-5'-exoribonuclease subunit Ccr4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CCR4 PE=1 SV=2 |
| Q5A761 | CCR4-Not complex 3'-5'-exoribonuclease subunit Ccr4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=CCR4 PE=3 SV=2 |
| Q6CJU4 | CCR4-Not complex 3'-5'-exoribonuclease subunit Ccr4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=CCR4 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003377 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03372 all species → | Exo_endo_phos | Endonuclease/Exonuclease/phosphatase family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036691 all species → | Homologous_superfamily | Endonuclease/exonuclease/phosphatase superfamily | Interproscan |
| IPR005135 all species → | Domain | Endonuclease/exonuclease/phosphatase | Interproscan |
| IPR050410 all species → | Family | CCR4/nocturin mRNA turnover and transcription | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12121 all species → | CARBON CATABOLITE REPRESSOR PROTEIN 4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0000175 all species → | Molecular Function | 3'-5'-RNA exonuclease activity | Interproscan |
| GO:0000289 all species → | Biological Process | nuclear-transcribed mRNA poly(A) tail shortening | Interproscan |
| GO:0004535 all species → | Molecular Function | poly(A)-specific ribonuclease activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0030014 all species → | Cellular Component | CCR4-NOT complex | Interproscan |
evm.model.Ap10.386.Transcript abundance of evm.model.Ap10.386 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
