Detailed information of evm.model.Ap10.480 in Astrangia poculata

Genomic Location: Ap10:4894544...4904413
NR annotation: XP_020606805.1, fibronectin type III domain-containing protein-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q96RW7Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
O89026Roundabout homolog 1 OS=Mus musculus OX=10090 GN=Robo1 PE=1 SV=1
Q9Y6N7Roundabout homolog 1 OS=Homo sapiens OX=9606 GN=ROBO1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000412 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13927
all species →		Ig_3Immunoglobulin domainDomainInterproscan
PF00041
all species →		fn3Fibronectin type III domainDomainInterproscan
PF13882
all species →		Bravo_FIGEYBravo-like intracellular regionDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003599
all species →		DomainImmunoglobulin subtypeInterproscan
IPR036116
all species →		Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR007110
all species →		DomainImmunoglobulin-like domainInterproscan
IPR036179
all species →		Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR051170
all species →		FamilyNeural and epithelial cell adhesion domain-containing proteinInterproscan
IPR003961
all species →		DomainFibronectin type IIIInterproscan
IPR003598
all species →		DomainImmunoglobulin subtype 2Interproscan
IPR026966
all species →		DomainNeurofascin/L1/NrCAM, C-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12231
all species →		CTX-RELATED TYPE I TRANSMEMBRANE PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap10.480.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP