Gene detail

Detailed information of evm.model.Ap10.485 in Astrangia poculata

Genomic Location: Ap10:4952798...4959174
NR annotation: XP_020606731.1, tetratricopeptide repeat protein 41-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.485

atggctcgtcgcgaagcgttcgtgaggacaccaaggatcagagagatgctggaagtgctgagccttcatgctgaagtggaacaagggatccggaggaagaccagtatggtggtaccggctgctgtgttgggtactttcatgaccagtctccctggtagtgacaaggaaaccctgcctcctgtgttggtgttagctggtgagagcggctgtggcaaatctaccctcgtcgctcattggctaaaacaaatcacctccaactatccccagatcgtcaccattccccactttgtcggctgtgactcaggcagtactgacatcgccaacttcatgcgccgctgtacaagcgaactgcggctccagtaccttgattccgacgttgatgacgtcactgacaaccaggacctcagcgactttactcgcgtggtagaggcgttcagagcggccatttccctaggtccgtgtgtaatcgtgttggatggagccgaccatttgggacccgctttagatgtcgctgcgtttaaagtaaaggaaatgcaatggctgccgtcttcagtcccagtctcctgcagaatcatcgtcaccaccacaagagctgatataacctatcgagctctctcgcagcggaaagatgcttactgtatagatgtccctcggttgtttgatgtaaggggcaagaatgatctactgaaggagtatgtcggctctaactacaagttcttagacgcagcacggttgtcgaaaataacgtcttccaatctggcgcacctcccattgttatacgtcgcccttgccagcgagttgcgagttttgggcgcgcacaagaacgcggacaggttgttagattcgtatgtgcatgcgtctaccctcttcgatttatggagcttgatatttcgtcgttggacccacgactacggttggttgcgcccagcggtgtcccgcggcccagttcccgccattaagacgcaagtgtcacgtgaccgtatgaacagtggttgggtggctgacgtgttaaggctgtttgccctgtcacgtgaggggttgtctgaaagtgaggttctaggcgccttgcaaatcatgggctatatgaagaactatgaagtcgccaaggctcattgggaaatgtttcgtttgatcgcggaacacgcgctcattgaaatgccttcgggtttgataaccttcccgcaccagtccgtccgcggcgcggtagaaattgcgttgctaggtaacctcacctctccgtcccaggaacgcgcggtttcacctgcatttcaagagagctgggaacgacagaagcaacagggtcacactgtgctctcgagtttcttttccaaacagccttcatctgggcgcatggtggacgagttactatggcaactgaacatgtgtggaaacttggacgcagtgagcaaaacgatttgtgaaccaagggtgtttctaaggttcgtgagttcgagaagtgaacaacgaagaaagaccgatttgttgtcatattggagtcttttgaagcaggcaaatcgcaagcctgaagagttgctctatcaaatggctgttaaagccgaagagagacttcacagcggatcaaaggaattaacagaacatgatattggatctgcttcttcaaaaaccaaagatatttcggctgttgacgagctatgccacaaggaaagcaacgagcacttttctcaactcgaagtggcgctcgttcattatttctcaggaaaattcctggcggaaaatgggcacgatctcatggcgcagaatcttcttttgaacgcatataagatggcatatccggtggtctcagtaaaggacatttacttgatgtgcgatatacaagagtccttggggaatttgtttcttaaactctctgagccgggtaaagctgtgttttggttcaatggtgctttgaagtctgcaggagaaatgactcgcatttctgacacggttgaacacgctgctatgattggccgccacttgaatcacatcgcgctgtgtcaactgccaagtcacgtgtctctcccacctgaagtacagagccgatcacgtgcgtccacgaggactggaagggctaagacaccaacttccggaagagaaaaagcagaagaggcaagatcgcagaacgtcggtgttattttggacgatgcgatgaagcacatgaaacttgctcaacagttttctggacaaagcaccgtttatttccacatgggcttgttggcggcgagacaaaagcgctgcgaggatgccgactccttgtttcgcaaatctctcaggatgcgagaggaatggtgcggctcgtctcatccgctggtggcggagatttatgacgcgttggcctcgctttcatgttcagacgctgcagagtccccggatgtcacggtggcggaagaaatgtttcgccgagccttgcacatgcgtgaagatctcttggggccgtctcatttgttggtggcgaatacgttattcaagttaggcaaactacttcaatccaagggcacaaaagatgctacaagagaagccaagctgcttttccagcgtgcactggacatacggacagcaaatcagggtgtctatcacacggataccaagactatcaggcgcgcactgatgtcactggaaacagtcgatttgggggcaaaattcagtagcaaagggactggaaaagaccaagagatgcttgctttagaaggactaagaagtcgctctttaacgaaggtatcttcacggaatcttgacttccgccaagctagtgcttcatag

Transcript

evm.model.Ap10.485

ATGGCTCGTCGCGAAGCGTTCGTGAGGACACCAAGGATCAGAGAGATGCTGGAAGTGCTGAGCCTTCATGCTGAAGTGGAACAAGGGATCCGGAGGAAGACCAGTATGGTGGTACCGGCTGCTGTGTTGGGTACTTTCATGACCAGTCTCCCTGGTAGTGACAAGGAAACCCTGCCTCCTGTGTTGGTGTTAGCTGGTGAGAGCGGCTGTGGCAAATCTACCCTCGTCGCTCATTGGCTAAAACAAATCACCTCCAACTATCCCCAGATCGTCACCATTCCCCACTTTGTCGGCTGTGACTCAGGCAGTACTGACATCGCCAACTTCATGCGCCGCTGTACAAGCGAACTGCGGCTCCAGTACCTTGATTCCGACGTTGATGACGTCACTGACAACCAGGACCTCAGCGACTTTACTCGCGTGGTAGAGGCGTTCAGAGCGGCCATTTCCCTAGGTCCGTGTGTAATCGTGTTGGATGGAGCCGACCATTTGGGACCCGCTTTAGATGTCGCTGCGTTTAAAGTAAAGGAAATGCAATGGCTGCCGTCTTCAGTCCCAGTCTCCTGCAGAATCATCGTCACCACCACAAGAGCTGATATAACCTATCGAGCTCTCTCGCAGCGGAAAGATGCTTACTGTATAGATGTCCCTCGGTTGTTTGATGTAAGGGGCAAGAATGATCTACTGAAGGAGTATGTCGGCTCTAACTACAAGTTCTTAGACGCAGCACGGTTGTCGAAAATAACGTCTTCCAATCTGGCGCACCTCCCATTGTTATACGTCGCCCTTGCCAGCGAGTTGCGAGTTTTGGGCGCGCACAAGAACGCGGACAGGTTGTTAGATTCGTATGTGCATGCGTCTACCCTCTTCGATTTATGGAGCTTGATATTTCGTCGTTGGACCCACGACTACGGTTGGTTGCGCCCAGCGGTGTCCCGCGGCCCAGTTCCCGCCATTAAGACGCAAGTGTCACGTGACCGTATGAACAGTGGTTGGGTGGCTGACGTGTTAAGGCTGTTTGCCCTGTCACGTGAGGGGTTGTCTGAAAGTGAGGTTCTAGGCGCCTTGCAAATCATGGGCTATATGAAGAACTATGAAGTCGCCAAGGCTCATTGGGAAATGTTTCGTTTGATCGCGGAACACGCGCTCATTGAAATGCCTTCGGGTTTGATAACCTTCCCGCACCAGTCCGTCCGCGGCGCGGTAGAAATTGCGTTGCTAGGTAACCTCACCTCTCCGTCCCAGGAACGCGCGGTTTCACCTGCATTTCAAGAGAGCTGGGAACGACAGAAGCAACAGGGTCACACTGTGCTCTCGAGTTTCTTTTCCAAACAGCCTTCATCTGGGCGCATGGTGGACGAGTTACTATGGCAACTGAACATGTGTGGAAACTTGGACGCAGTGAGCAAAACGATTTGTGAACCAAGGGTGTTTCTAAGGTTCGTGAGTTCGAGAAGTGAACAACGAAGAAAGACCGATTTGTTGTCATATTGGAGTCTTTTGAAGCAGGCAAATCGCAAGCCTGAAGAGTTGCTCTATCAAATGGCTGTTAAAGCCGAAGAGAGACTTCACAGCGGATCAAAGGAATTAACAGAACATGATATTGGATCTGCTTCTTCAAAAACCAAAGATATTTCGGCTGTTGACGAGCTATGCCACAAGGAAAGCAACGAGCACTTTTCTCAACTCGAAGTGGCGCTCGTTCATTATTTCTCAGGAAAATTCCTGGCGGAAAATGGGCACGATCTCATGGCGCAGAATCTTCTTTTGAACGCATATAAGATGGCATATCCGGTGGTCTCAGTAAAGGACATTTACTTGATGTGCGATATACAAGAGTCCTTGGGGAATTTGTTTCTTAAACTCTCTGAGCCGGGTAAAGCTGTGTTTTGGTTCAATGGTGCTTTGAAGTCTGCAGGAGAAATGACTCGCATTTCTGACACGGTTGAACACGCTGCTATGATTGGCCGCCACTTGAATCACATCGCGCTGTGTCAACTGCCAAGTCACGTGTCTCTCCCACCTGAAGTACAGAGCCGATCACGTGCGTCCACGAGGACTGGAAGGGCTAAGACACCAACTTCCGGAAGAGAAAAAGCAGAAGAGGCAAGATCGCAGAACGTCGGTGTTATTTTGGACGATGCGATGAAGCACATGAAACTTGCTCAACAGTTTTCTGGACAAAGCACCGTTTATTTCCACATGGGCTTGTTGGCGGCGAGACAAAAGCGCTGCGAGGATGCCGACTCCTTGTTTCGCAAATCTCTCAGGATGCGAGAGGAATGGTGCGGCTCGTCTCATCCGCTGGTGGCGGAGATTTATGACGCGTTGGCCTCGCTTTCATGTTCAGACGCTGCAGAGTCCCCGGATGTCACGGTGGCGGAAGAAATGTTTCGCCGAGCCTTGCACATGCGTGAAGATCTCTTGGGGCCGTCTCATTTGTTGGTGGCGAATACGTTATTCAAGTTAGGCAAACTACTTCAATCCAAGGGCACAAAAGATGCTACAAGAGAAGCCAAGCTGCTTTTCCAGCGTGCACTGGACATACGGACAGCAAATCAGGGTGTCTATCACACGGATACCAAGACTATCAGGCGCGCACTGATGTCACTGGAAACAGTCGATTTGGGGGCAAAATTCAGTAGCAAAGGGACTGGAAAAGACCAAGAGATGCTTGCTTTAGAAGGACTAAGAAGTCGCTCTTTAACGAAGGTATCTTCACGGAATCTTGACTTCCGCCAAGCTAGTGCTTCATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q692V3	Tetratricopeptide repeat protein 41 OS=Mus musculus OX=10090 GN=Ttc41 PE=1 SV=1
Q6P3V7	Tetratricopeptide repeat protein 41 OS=Rattus norvegicus OX=10116 GN=Ttc41 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009454 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13374 all species →	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13401 all species →	AAA_22	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR049945 all species →	Domain	ORC1/DEAH AAA+ ATPase domain	Interproscan
IPR051191 all species →	Family	DDB1-CUL4-associated factor 12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19860 all species →	DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0080008 all species →	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap10.485.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.