Gene detail

Detailed information of evm.model.Ap10.486 in Astrangia poculata

Genomic Location: Ap10:4960193...4971574
NR annotation: XP_020606732.1, endoplasmin-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.486

atggggagaaaaacattccttttaagcctcttagggctacttctaatttccactctttgtttagcagaagaatctgaaaaaacagaagagaaaacagagacagaaccacctactgtcgatgaagatgttggtaaaagtagagatggttccaaaacagacgatgaggctgtacaaagggaggaagaagccattaaacttgatggtttgaatgtagcacagatgaaagaactaagagagaaggcagagaaacatgctttccaagctgaagttagtcgtatgatgaagcttattatcaactccttgtacagaaacaaagagattttcttgagagaacttatttccaattcatctgatgccttggataagattcgatttttgtcactcactgataaatcagcccttgctgcaacagaagaactctccattaagatcaaagctgacaaagaaaacaacatccttcacgttactgatactggcattggcatgactaaagatgatctggtcaaaaacctgggtaccattgccaagtcaggaactagcgagtttttccagaagatggcggaagcttcgtcaggcgatcaggcaagtgatctcatcggccagtttggtgttggtttttactcttcattcctggttgccgaccgtgtcattgtaacatcaaaacacaatgatgataagcagtacatctgggagtctgatgcggcatcttttagcatctcagaggaccccaggggcaatacccttgggaggggaacaacgataagtgttcatctgaaggaggaagctcgtgacttcttggaacctgacaccgtcaaggaccttgtgaaaaaatacagtcagttcatcaacttcaacatctacctgtggacaagcaagactgaggaagtcgaggagccaatcgaggaagaggctgctgctgaggacaagaaggctgacgaagctgcggaagacaagaaagaagagaaagacgcagagaaggatgaggagaagaaggatgaagataaggagaaagaagacaaagatgatgatgtagaggttgaggaagaatcagaagagaaggagaaaaagcccaagactaagaaggtggagaaaactgtttgggactgggaacttatcaacaccaacaaaccaatctggagccgaaaaccaaaagacgtcaaggatgaggaatacaatgaattctacaaatcattcaccaaggatcatgatgaccctcttgccaagactcactttgttgccgagggtgaagtaacattccgatcaattctgtatgtaccaaaatcagccccacacaacctcttctctgagtacggcaagaaaatggaccagatcaagctgtatgtacgacgtgtctttatcactgataactttgaggacatgatgcccaagtacctttccttcatccgtggtatcgtggactcagatgatcttccattgaacgtcagtcgtgaaactctccaacagcacaaattgttgaaggttattaagaagaagcttgtacgaaaggctttggacatgatcaaaaagatccccaaggaagaatacatggataaattctggaaggaattcagcacaagcatcaagcttggtgtgatggaggaccactctaacagaacccgattggctaaactgctgcgattctattcctctaactctgataaggagatgacaagcttggctgaatacatcgagagaatgaaggagaaacaggatactatttacttcatggcaggaactagccgtaaggaggttgagagctctccattcgtggaaaaactcctgaagaagggttacgaggtgctgttcttgattgaggcagtggatgagtactgcattcagagtctgcctgaatttgaaggaaagaaattccaaaacgtagccaaagaagggctgaagatcggagaagacaatgagaaatcaaagaagaagcaggaggctttggagagcacatatgagcctctactcaaatggctgaaggaagatgccctcaaggatctgatcgagaaggcagctgtctctcagcgtttggacgagtcaccatgcgcccttgtagccagctcgtatggctggtctggtaacatggaaaggatcatgagatcacaagcctatgccaagagcaatgaccaaagtaacgaatactatgccaaccagaagaagacacttgaaatgaaccccagacatccattggtcaaagagctcctcaagagagtggaggccgacaaagaagacaaaactgctaaagatcttgcccgtgtactctttgaaactgcaaccttgagatcagggttcatggtcaaggactcacaagactttgccggacgtatcgagcgcatgctccgtcttagcatgggtgtcgacctggaagccatggtggaacccgaggaggaagaggctgagaaggaggaggaagaggacaaggatggagaagaggtagatgcagagggagacaaagaggatgagaagacggaagaggagtcagctgaggaggcagcagcggagggagagaccaagacagaggagaaagaagatgaagtggagggagaatctaaagaagccccagcagaaccaaaagatgagctttag

Transcript

evm.model.Ap10.486

ATGGGGAGAAAAACATTCCTTTTAAGCCTCTTAGGGCTACTTCTAATTTCCACTCTTTGTTTAGCAGAAGAATCTGAAAAAACAGAAGAGAAAACAGAGACAGAACCACCTACTGTCGATGAAGATGTTGGTAAAAGTAGAGATGGTTCCAAAACAGACGATGAGGCTGTACAAAGGGAGGAAGAAGCCATTAAACTTGATGGTTTGAATGTAGCACAGATGAAAGAACTAAGAGAGAAGGCAGAGAAACATGCTTTCCAAGCTGAAGTTAGTCGTATGATGAAGCTTATTATCAACTCCTTGTACAGAAACAAAGAGATTTTCTTGAGAGAACTTATTTCCAATTCATCTGATGCCTTGGATAAGATTCGATTTTTGTCACTCACTGATAAATCAGCCCTTGCTGCAACAGAAGAACTCTCCATTAAGATCAAAGCTGACAAAGAAAACAACATCCTTCACGTTACTGATACTGGCATTGGCATGACTAAAGATGATCTGGTCAAAAACCTGGGTACCATTGCCAAGTCAGGAACTAGCGAGTTTTTCCAGAAGATGGCGGAAGCTTCGTCAGGCGATCAGGCAAGTGATCTCATCGGCCAGTTTGGTGTTGGTTTTTACTCTTCATTCCTGGTTGCCGACCGTGTCATTGTAACATCAAAACACAATGATGATAAGCAGTACATCTGGGAGTCTGATGCGGCATCTTTTAGCATCTCAGAGGACCCCAGGGGCAATACCCTTGGGAGGGGAACAACGATAAGTGTTCATCTGAAGGAGGAAGCTCGTGACTTCTTGGAACCTGACACCGTCAAGGACCTTGTGAAAAAATACAGTCAGTTCATCAACTTCAACATCTACCTGTGGACAAGCAAGACTGAGGAAGTCGAGGAGCCAATCGAGGAAGAGGCTGCTGCTGAGGACAAGAAGGCTGACGAAGCTGCGGAAGACAAGAAAGAAGAGAAAGACGCAGAGAAGGATGAGGAGAAGAAGGATGAAGATAAGGAGAAAGAAGACAAAGATGATGATGTAGAGGTTGAGGAAGAATCAGAAGAGAAGGAGAAAAAGCCCAAGACTAAGAAGGTGGAGAAAACTGTTTGGGACTGGGAACTTATCAACACCAACAAACCAATCTGGAGCCGAAAACCAAAAGACGTCAAGGATGAGGAATACAATGAATTCTACAAATCATTCACCAAGGATCATGATGACCCTCTTGCCAAGACTCACTTTGTTGCCGAGGGTGAAGTAACATTCCGATCAATTCTGTATGTACCAAAATCAGCCCCACACAACCTCTTCTCTGAGTACGGCAAGAAAATGGACCAGATCAAGCTGTATGTACGACGTGTCTTTATCACTGATAACTTTGAGGACATGATGCCCAAGTACCTTTCCTTCATCCGTGGTATCGTGGACTCAGATGATCTTCCATTGAACGTCAGTCGTGAAACTCTCCAACAGCACAAATTGTTGAAGGTTATTAAGAAGAAGCTTGTACGAAAGGCTTTGGACATGATCAAAAAGATCCCCAAGGAAGAATACATGGATAAATTCTGGAAGGAATTCAGCACAAGCATCAAGCTTGGTGTGATGGAGGACCACTCTAACAGAACCCGATTGGCTAAACTGCTGCGATTCTATTCCTCTAACTCTGATAAGGAGATGACAAGCTTGGCTGAATACATCGAGAGAATGAAGGAGAAACAGGATACTATTTACTTCATGGCAGGAACTAGCCGTAAGGAGGTTGAGAGCTCTCCATTCGTGGAAAAACTCCTGAAGAAGGGTTACGAGGTGCTGTTCTTGATTGAGGCAGTGGATGAGTACTGCATTCAGAGTCTGCCTGAATTTGAAGGAAAGAAATTCCAAAACGTAGCCAAAGAAGGGCTGAAGATCGGAGAAGACAATGAGAAATCAAAGAAGAAGCAGGAGGCTTTGGAGAGCACATATGAGCCTCTACTCAAATGGCTGAAGGAAGATGCCCTCAAGGATCTGATCGAGAAGGCAGCTGTCTCTCAGCGTTTGGACGAGTCACCATGCGCCCTTGTAGCCAGCTCGTATGGCTGGTCTGGTAACATGGAAAGGATCATGAGATCACAAGCCTATGCCAAGAGCAATGACCAAAGTAACGAATACTATGCCAACCAGAAGAAGACACTTGAAATGAACCCCAGACATCCATTGGTCAAAGAGCTCCTCAAGAGAGTGGAGGCCGACAAAGAAGACAAAACTGCTAAAGATCTTGCCCGTGTACTCTTTGAAACTGCAACCTTGAGATCAGGGTTCATGGTCAAGGACTCACAAGACTTTGCCGGACGTATCGAGCGCATGCTCCGTCTTAGCATGGGTGTCGACCTGGAAGCCATGGTGGAACCCGAGGAGGAAGAGGCTGAGAAGGAGGAGGAAGAGGACAAGGATGGAGAAGAGGTAGATGCAGAGGGAGACAAAGAGGATGAGAAGACGGAAGAGGAGTCAGCTGAGGAGGCAGCAGCGGAGGGAGAGACCAAGACAGAGGAGAAAGAAGATGAAGTGGAGGGAGAATCTAAAGAAGCCCCAGCAGAACCAAAAGATGAGCTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P08110	Endoplasmin OS=Gallus gallus OX=9031 GN=HSP90B1 PE=1 SV=1
Q29092	Endoplasmin OS=Sus scrofa OX=9823 GN=HSP90B1 PE=2 SV=3
P41148	Endoplasmin OS=Canis lupus familiaris OX=9615 GN=HSP90B1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001833 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00183 all species →	HSP90	Hsp90 protein	Family	Interproscan
PF13589 all species →	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037196 all species →	Homologous_superfamily	HSP90, C-terminal domain	Interproscan
IPR003594 all species →	Domain	Histidine kinase/HSP90-like ATPase	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR001404 all species →	Family	Heat shock protein Hsp90 family	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR020575 all species →	Domain	Heat shock protein Hsp90, N-terminal	Interproscan
IPR019805 all species →	Conserved_site	Heat shock protein Hsp90, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11528 all species →	HEAT SHOCK PROTEIN 90 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0048471 all species →	Cellular Component	perinuclear region of cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09487	HSP90B, TRA1; heat shock protein 90kDa beta	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.