Gene detail

Detailed information of evm.model.Ap10.496 in Astrangia poculata

Genomic Location: Ap10:5089238...5113477
NR annotation: CAH3112312.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.496

atggaattggggccacagagctctcaagtgcgacatggcaagcaaggttttgtgcctccctttaaagcttcaactcgagctgttcaaatgccaccaccctcaccgccaatgttggacgacatactctcacaaatgtcccaaagagactctatcacgtctacgcaactcttccgctcaaactctgaatacttcaacaacgcaagaaaacacgcaccgtctaccgttgcagatttgtcatcttttaacaaacgaggatcttcattccaaagcagctacggaagccagatgagccaagcacggggtgactggttttcaagtggctcgcagccaactcaaacacattcaagatacttacagccatcagtgttaactaatgaagaagaattagaagctgattatggagatgaagagttcatacaagattccccagagctgtttacccaacgcagcgactttcacctgcgaggggctccacttgcgacatctgacctggagcatatggagaactcagaaggtgtgacgttgaatgactattacccagaagatgaagagaatcataggtcctaccaagcaccggcaccgcggaacaacttcgacactccaggtcaacttgttataccagcttttggtgatcaacctggtagggtcaacacagctataggacttcgatctgttaatgaaatacgtatcctttggtatttgtatggaccggaggagtcaaaaaccatatcctatccagcggtgatgtacacggacagaccgctcgttgtttgcgccccgactggatctggcaaaaccgttatttttgaactggctatcattcggttactcgtgaacagtggacaggggacatccaaggctaaagtagtgtacatggccccaatgaaggcactatgcagtgaacgcttcacagactggtcaaccaaatttgaaccatttggcttgaaatgtaaagaagtaacaggagatagcgagctagacgactactatgaactacagaacgtccacattatcatgacgacacctgagaaatgggacagcatgactagaaagtggagagacaacagatctttggttcagtcggtgaagctgtttctcattgatgaggttcatctcctaaacgatgatgcaagaggagctaccgttgaagctgttattagtcgcatgaagaccgttcagtctaccatgactcgaaatagcacctcaggaaacacgaacagtcaagatagagcgggaatgcggttaatagccatctcagccactataccaaatattgaagatatcgcggcttggcttggaggaatagactctccagcatcacactacagtatggatgattcacacagaccagtgaagctaagaaaggttgtccttggctttcccaaaggaaataactactctgacttccgatttgacttgtctctcaattataaactgagtggaattattcagacttactcggatagaaagcctactctagtggttggggctcaggaattagaaagaaaaaaggcagaattggagaatataattgagtaccgcaccaaaggtgcaatcttaagatcgaaatgtagatggtataatgagggagaaagaaacacaaaatactttttaaacatggaaaaaaggcactacaaacagggagtaataagtcagcttaaaattaatgatgatgaaacagtaaacactgataaagaaatcctaaatcagtgtgaatccttttacagaaacctttatagctctcatatgaataacaacgacacttatgttaataacatgtttttcgacgagaataatactaagatgctgaacccagacgagcaaatgtcatgcgaaggcctgctgtccaaagaggaatgtttacaagccttaaaaaatacagaaacaaataaaacaccaggctcagacggaatacctgcagaattctataaagttttctggaatgatttgtcggacttccttgttaattcgattaattctgcatatcaaacagggcaattttcggtaacccagagacgcggaatcattaaattaatccccaaaaaagatgcagaaccttactttattaagaactggagaccaataacccttttgaactgcgactacaaaattgcgaccaaagctattgcgaatagactaaaaaaagttctaccgaacgttgtagataacgatcaaactggatttctcaaagataggtttatcggggagaatattagactcattgacagcataatccattacgcaacggccaacaaagtccctggtcttctactttttctcgacttcgaaaaagcatttgatacaggtctttttcaacagttctgttcaacacggaagagtgcccagcaagcagcacagacgcttgtgaaagacgcacgatttatcatgaactcacaacacaggcaaaggctccaaaggattgctaactctcttcatgattcgaaactaagagaactggtgatatgtgggattggctatcatcatgcaggactggaccctaccgatcgaagaaatattgagacaatgttcatcaaaggtgacctgcctgtaatatttgccaccagtactctggctgttggggtaaatcttcccgctcaccttgttatcatcaagtcaactgcacattacgtaatgggcgtgtttcaagagtactctgaaacacaaatactacagatgattggaagagctggaagaccacagtttgatacctctgccactgcagtcatcttgacaacgagtgctaataaggacaagtacaccggcctacttgaaggaactcagaagttagaaagcagcttgcaccatcacttaatcgagcatttgaatgcagagatcgttcttaacactatcactgacgtgtctattgccttggaatggttaaagtcgacattcctatatataaggatattgaaaaaccctacacattatggaatacctgagggacttgagaaagaaagtctggagcaaaagttacaagacatttgtttgaaaagcctaaacacactggaaaaggcagggctcattaaaatggatgacggatttgatctgaagcctacagaggcaggccgtctaatggccagatactgcattgcttacgactccatgaaacaattccttcaaatcaaaggaactgaaagcctcagtgatatggttgacatggtgtcgaaatgcaaggaattttccgacgtcaagctacgagtgaatgaaaagcgagcgctgaatcttcttaacaaggacaagaataaggaaactataagcctcattcaaggtacccttggttctctcactatagcggagttttcccttagccaagatgttacgaaaatcttccgagcaggacaaagaattacacgctgtttgaccgagcttcaaatgctaaagaatgactttatgtcacttcagaacgcagttatacttgcgaagtgtatgagagccaggttgtgggaaaattccaagtttgtttcaaagcaactggagaaagtcggaccttctttatcgactatgatggtcaacgctggcttaacaaccttcaagaaaatcgaagagacaaatcctcgagaaatagaactgatcgtgaatcgtcatccacctttcggaagccagattcgcgaagcagcttcaaatctgccaaagtatgagctgtctgttcagcagactggaagacaccagccaaaccgtgcagagatagttatcacattaaccatgacgaactacatgaaacgaagagatgccattggctcgggacggaacagccatttttgccttctgttgattgctgatgctgacaataaagtggtgttcaaacagagattaggggactttgtgtttgtgaaggagggatactggagtaagcgagtggatatacaacgggcagctgttcagtccccagaactcaacataaacctcatcagtcaagaatatggtatcactgcagtagcttatattattaatcacaacaagactaatttagtctaa

Transcript

evm.model.Ap10.496

ATGGAATTGGGGCCACAGAGCTCTCAAGTGCGACATGGCAAGCAAGGTTTTGTGCCTCCCTTTAAAGCTTCAACTCGAGCTGTTCAAATGCCACCACCCTCACCGCCAATGTTGGACGACATACTCTCACAAATGTCCCAAAGAGACTCTATCACGTCTACGCAACTCTTCCGCTCAAACTCTGAATACTTCAACAACGCAAGAAAACACGCACCGTCTACCGTTGCAGATTTGTCATCTTTTAACAAACGAGGATCTTCATTCCAAAGCAGCTACGGAAGCCAGATGAGCCAAGCACGGGGTGACTGGTTTTCAAGTGGCTCGCAGCCAACTCAAACACATTCAAGATACTTACAGCCATCAGTGTTAACTAATGAAGAAGAATTAGAAGCTGATTATGGAGATGAAGAGTTCATACAAGATTCCCCAGAGCTGTTTACCCAACGCAGCGACTTTCACCTGCGAGGGGCTCCACTTGCGACATCTGACCTGGAGCATATGGAGAACTCAGAAGGTGTGACGTTGAATGACTATTACCCAGAAGATGAAGAGAATCATAGGTCCTACCAAGCACCGGCACCGCGGAACAACTTCGACACTCCAGGTCAACTTGTTATACCAGCTTTTGGTGATCAACCTGGTAGGGTCAACACAGCTATAGGACTTCGATCTGTTAATGAAATACGTATCCTTTGGTATTTGTATGGACCGGAGGAGTCAAAAACCATATCCTATCCAGCGGTGATGTACACGGACAGACCGCTCGTTGTTTGCGCCCCGACTGGATCTGGCAAAACCGTTATTTTTGAACTGGCTATCATTCGGTTACTCGTGAACAGTGGACAGGGGACATCCAAGGCTAAAGTAGTGTACATGGCCCCAATGAAGGCACTATGCAGTGAACGCTTCACAGACTGGTCAACCAAATTTGAACCATTTGGCTTGAAATGTAAAGAAGTAACAGGAGATAGCGAGCTAGACGACTACTATGAACTACAGAACGTCCACATTATCATGACGACACCTGAGAAATGGGACAGCATGACTAGAAAGTGGAGAGACAACAGATCTTTGGTTCAGTCGGTGAAGCTGTTTCTCATTGATGAGGTTCATCTCCTAAACGATGATGCAAGAGGAGCTACCGTTGAAGCTGTTATTAGTCGCATGAAGACCGTTCAGTCTACCATGACTCGAAATAGCACCTCAGGAAACACGAACAGTCAAGATAGAGCGGGAATGCGGTTAATAGCCATCTCAGCCACTATACCAAATATTGAAGATATCGCGGCTTGGCTTGGAGGAATAGACTCTCCAGCATCACACTACAGTATGGATGATTCACACAGACCAGTGAAGCTAAGAAAGGTTGTCCTTGGCTTTCCCAAAGGAAATAACTACTCTGACTTCCGATTTGACTTGTCTCTCAATTATAAACTGAGTGGAATTATTCAGACTTACTCGGATAGAAAGCCTACTCTAGTGGTTGGGGCTCAGGAATTAGAAAGAAAAAAGGCAGAATTGGAGAATATAATTGAGTACCGCACCAAAGGTGCAATCTTAAGATCGAAATGTAGATGGTATAATGAGGGAGAAAGAAACACAAAATACTTTTTAAACATGGAAAAAAGGCACTACAAACAGGGAGTAATAAGTCAGCTTAAAATTAATGATGATGAAACAGTAAACACTGATAAAGAAATCCTAAATCAGTGTGAATCCTTTTACAGAAACCTTTATAGCTCTCATATGAATAACAACGACACTTATGTTAATAACATGTTTTTCGACGAGAATAATACTAAGATGCTGAACCCAGACGAGCAAATGTCATGCGAAGGCCTGCTGTCCAAAGAGGAATGTTTACAAGCCTTAAAAAATACAGAAACAAATAAAACACCAGGCTCAGACGGAATACCTGCAGAATTCTATAAAGTTTTCTGGAATGATTTGTCGGACTTCCTTGTTAATTCGATTAATTCTGCATATCAAACAGGGCAATTTTCGGTAACCCAGAGACGCGGAATCATTAAATTAATCCCCAAAAAAGATGCAGAACCTTACTTTATTAAGAACTGGAGACCAATAACCCTTTTGAACTGCGACTACAAAATTGCGACCAAAGCTATTGCGAATAGACTAAAAAAAGTTCTACCGAACGTTGTAGATAACGATCAAACTGGATTTCTCAAAGATAGGTTTATCGGGGAGAATATTAGACTCATTGACAGCATAATCCATTACGCAACGGCCAACAAAGTCCCTGGTCTTCTACTTTTTCTCGACTTCGAAAAAGCATTTGATACAGGTCTTTTTCAACAGTTCTGTTCAACACGGAAGAGTGCCCAGCAAGCAGCACAGACGCTTGTGAAAGACGCACGATTTATCATGAACTCACAACACAGGCAAAGGCTCCAAAGGATTGCTAACTCTCTTCATGATTCGAAACTAAGAGAACTGGTGATATGTGGGATTGGCTATCATCATGCAGGACTGGACCCTACCGATCGAAGAAATATTGAGACAATGTTCATCAAAGGTGACCTGCCTGTAATATTTGCCACCAGTACTCTGGCTGTTGGGGTAAATCTTCCCGCTCACCTTGTTATCATCAAGTCAACTGCACATTACGTAATGGGCGTGTTTCAAGAGTACTCTGAAACACAAATACTACAGATGATTGGAAGAGCTGGAAGACCACAGTTTGATACCTCTGCCACTGCAGTCATCTTGACAACGAGTGCTAATAAGGACAAGTACACCGGCCTACTTGAAGGAACTCAGAAGTTAGAAAGCAGCTTGCACCATCACTTAATCGAGCATTTGAATGCAGAGATCGTTCTTAACACTATCACTGACGTGTCTATTGCCTTGGAATGGTTAAAGTCGACATTCCTATATATAAGGATATTGAAAAACCCTACACATTATGGAATACCTGAGGGACTTGAGAAAGAAAGTCTGGAGCAAAAGTTACAAGACATTTGTTTGAAAAGCCTAAACACACTGGAAAAGGCAGGGCTCATTAAAATGGATGACGGATTTGATCTGAAGCCTACAGAGGCAGGCCGTCTAATGGCCAGATACTGCATTGCTTACGACTCCATGAAACAATTCCTTCAAATCAAAGGAACTGAAAGCCTCAGTGATATGGTTGACATGGTGTCGAAATGCAAGGAATTTTCCGACGTCAAGCTACGAGTGAATGAAAAGCGAGCGCTGAATCTTCTTAACAAGGACAAGAATAAGGAAACTATAAGCCTCATTCAAGGTACCCTTGGTTCTCTCACTATAGCGGAGTTTTCCCTTAGCCAAGATGTTACGAAAATCTTCCGAGCAGGACAAAGAATTACACGCTGTTTGACCGAGCTTCAAATGCTAAAGAATGACTTTATGTCACTTCAGAACGCAGTTATACTTGCGAAGTGTATGAGAGCCAGGTTGTGGGAAAATTCCAAGTTTGTTTCAAAGCAACTGGAGAAAGTCGGACCTTCTTTATCGACTATGATGGTCAACGCTGGCTTAACAACCTTCAAGAAAATCGAAGAGACAAATCCTCGAGAAATAGAACTGATCGTGAATCGTCATCCACCTTTCGGAAGCCAGATTCGCGAAGCAGCTTCAAATCTGCCAAAGTATGAGCTGTCTGTTCAGCAGACTGGAAGACACCAGCCAAACCGTGCAGAGATAGTTATCACATTAACCATGACGAACTACATGAAACGAAGAGATGCCATTGGCTCGGGACGGAACAGCCATTTTTGCCTTCTGTTGATTGCTGATGCTGACAATAAAGTGGTGTTCAAACAGAGATTAGGGGACTTTGTGTTTGTGAAGGAGGGATACTGGAGTAAGCGAGTGGATATACAACGGGCAGCTGTTCAGTCCCCAGAACTCAACATAAACCTCATCAGTCAAGAATATGGTATCACTGCAGTAGCTTATATTATTAATCACAACAAGACTAATTTAGTCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2RUV5	Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis OX=8364 GN=hfm1 PE=2 SV=1
A2PYH4	Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens OX=9606 GN=HFM1 PE=1 SV=2
D3Z4R1	Probable ATP-dependent DNA helicase HFM1 OS=Mus musculus OX=10090 GN=Hfm1 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002419 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF02889 all species →	Sec63	Sec63 Brl domain	Family	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004179 all species →	Domain	Sec63 domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR052247 all species →	Family	Meiotic Crossover Helicase	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47835 all species →	HFM1, ATP DEPENDENT DNA HELICASE HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15271	HFM1, MER3; ATP-dependent DNA helicase HFM1/MER3	EC:5.6.2.4	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.