Gene detail

Detailed information of evm.model.Ap10.583 in Astrangia poculata

Genomic Location: Ap10:5851743...5868245
NR annotation: CAH3112281.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.583

atggaagtagatgagactaatgatcatgaagagctaaatgaagtttctttacaacacgaagcgccgtgcactgtagacccgaaggcgctggaagaaaatggcggcgatcttgctttcgcgtccacattttcaacagatggtcaagtcactgcactcgctgaattgtctggagtgaagagaaaacacactgatcaaacagatgaccaagtcaataagcatctacatctggaccctgagacttcagatgggtttgccgacttggcaacgctggtcaatatgtcctctgccgtgtcacttgctgtttctcaggaagtaacttcccagaccttcagcaccacaactattgacaatggtggccaactcgcctctctgtcagctcaagaagcagcaaatgcgacgttaagtttatcagcagctgttgcagctctagcagcagggcaacttccccaagagtcatcaatcattccagcaacccaacccgttgttataagtgaaaataacaattctgttaatcaagcatggtttactactaaagaagataaagacaacctccatggcaaaggtgtcaagtggaagcaaggaatgtggtctaaggaagaaaatgaccaattaaaagagaatatacttgactactgcaaggctaacaacatcccagatcctaatataatcatatttgaaatgactaaagatgatcgtaaggatttctacagaacaataggtaaatacggagtacagacatggaacaagcgggagataacagtttacgaaggcggaggcgggagtgaaggcacaggaggcggagccaaagggatcagacgccctttatttgctatctatcgccgagtgcttcgcatgtacgacagacggaattatgtgggaaagtactctgcagaagaagtggaacagttgaaatccttgaaagagaagcatggtaacgactgggctacaattggtgcagccatgggacggagtgcttcatctgtgaaggacaggtttagacttatgagagatcactgccattcaggtaaatggactgcagaggaggagcagaggctttctggtgcagtgcatgagcttggcagcacatcttcaggtcctggagatttcatcactgcagggatatcatgggctgctgtagccgagagggttggcacgcggtcagagaagcagtgccgctcaaaatggttaaactatttaaattggaaggagaaaggagggcaggaatggacaaagcaagatgaaattcaactcatcactaggatccacaacatgaatcttcaagatgaaaatgaattagattggcaagttatggccagcaactggtccagtgttcggtcacctcagtggcttaggagtaagtggtgggctttgaaaaaacatgttcctgaaagtgatacagtaacatttcaaggaatagtctcttatctataccatacctatattgcgacactgcagaataaaattgagaggcaggaagcacgttttaaagggaatcatattccacgagtgcccttggtgcctggtgcaagaccagttcatgttaacccgatatcaacaggaactatcactaactctggaatttctcatacaatatcagtcagtagcgatggtacagtgacatcaagagacgacgacacctctcccctcaccaccagtaataaatttgcggtggtacaagtcagtgcgcttacaccacaagacatgtttcataacgcgaccgctgtccagggaacaccatcctacatctttcaagcacccgcaggacagacatacatcatacagcagccagtgagacagacacatactggagagctgacgacaggatctgaggggatagacactaatcaacacgaccaggaggtggtcacggttttgcaggctcatcacgctgtacaaactcttccagaggttggacctgagttcacacaggccattgtacaaacagatatctctggacctattactgcttctgaactaactaacgcaagtcttggtcacgcaaaatttgcaaaatctgacgcggatttacaggcgcgtgtcgttgcacaggacgataacaactcggacacagtagacccaaccagcctggaagctgtgggtgtacaaactgtggatagcaatgagctagacaaccatgagggtcttgctgcctctttaacagaaggtgaacttacagtggagtcagctaaggacgagcaagcgataaaacaaacaagcgagctgcacctagctgcctctcatataggtcactctaaggctgtgttcacaacttctcagcaaacggggaggggagaagacagtgtgacttcgacaagtgcggtgtacactagtcccccatttcagggtcctgcggcaatcgctcagactctagatggaacacatctcccagaaagaccagttgtacacatgcatcaagttggtccaggaaacagagacgttgttgtcagtccagatcccttgggagacgtgcacgtcacggtcatgtcaaacatagacacaagcattgcggctacattatccccatcatccgccatgaggcttagccagcatgcattgagtcgaagtaacaatgctagcgatttgtctgtgaatgctatggtacctcaagtcacgctgccggacgagatccttcaatcgcagtcagacgaagcgtcggtgttatctccggcagaatcagctagtgttatgatggtgtcggaaaaccctatgacggtcacgtcaacactcccctctcaaatcctgcaatcacagactgatgacaatccaaacctgtctgaccccactcccacgtcaaacagtacagtctccggtgggttagttgttaatactgccctggggaatgttgttactgtcccgggtggtctggaacaccccggtgacattatggatgctagcgatgtgttgcttcatatcgggggtatttcaatccctatttcgaattcttctgttacgtcagacaagcaagactgttcaacggaaacatga

Transcript

evm.model.Ap10.583

ATGGAAGTAGATGAGACTAATGATCATGAAGAGCTAAATGAAGTTTCTTTACAACACGAAGCGCCGTGCACTGTAGACCCGAAGGCGCTGGAAGAAAATGGCGGCGATCTTGCTTTCGCGTCCACATTTTCAACAGATGGTCAAGTCACTGCACTCGCTGAATTGTCTGGAGTGAAGAGAAAACACACTGATCAAACAGATGACCAAGTCAATAAGCATCTACATCTGGACCCTGAGACTTCAGATGGGTTTGCCGACTTGGCAACGCTGGTCAATATGTCCTCTGCCGTGTCACTTGCTGTTTCTCAGGAAGTAACTTCCCAGACCTTCAGCACCACAACTATTGACAATGGTGGCCAACTCGCCTCTCTGTCAGCTCAAGAAGCAGCAAATGCGACGTTAAGTTTATCAGCAGCTGTTGCAGCTCTAGCAGCAGGGCAACTTCCCCAAGAGTCATCAATCATTCCAGCAACCCAACCCGTTGTTATAAGTGAAAATAACAATTCTGTTAATCAAGCATGGTTTACTACTAAAGAAGATAAAGACAACCTCCATGGCAAAGGTGTCAAGTGGAAGCAAGGAATGTGGTCTAAGGAAGAAAATGACCAATTAAAAGAGAATATACTTGACTACTGCAAGGCTAACAACATCCCAGATCCTAATATAATCATATTTGAAATGACTAAAGATGATCGTAAGGATTTCTACAGAACAATAGGTAAATACGGAGTACAGACATGGAACAAGCGGGAGATAACAGTTTACGAAGGCGGAGGCGGGAGTGAAGGCACAGGAGGCGGAGCCAAAGGGATCAGACGCCCTTTATTTGCTATCTATCGCCGAGTGCTTCGCATGTACGACAGACGGAATTATGTGGGAAAGTACTCTGCAGAAGAAGTGGAACAGTTGAAATCCTTGAAAGAGAAGCATGGTAACGACTGGGCTACAATTGGTGCAGCCATGGGACGGAGTGCTTCATCTGTGAAGGACAGGTTTAGACTTATGAGAGATCACTGCCATTCAGGTAAATGGACTGCAGAGGAGGAGCAGAGGCTTTCTGGTGCAGTGCATGAGCTTGGCAGCACATCTTCAGGTCCTGGAGATTTCATCACTGCAGGGATATCATGGGCTGCTGTAGCCGAGAGGGTTGGCACGCGGTCAGAGAAGCAGTGCCGCTCAAAATGGTTAAACTATTTAAATTGGAAGGAGAAAGGAGGGCAGGAATGGACAAAGCAAGATGAAATTCAACTCATCACTAGGATCCACAACATGAATCTTCAAGATGAAAATGAATTAGATTGGCAAGTTATGGCCAGCAACTGGTCCAGTGTTCGGTCACCTCAGTGGCTTAGGAGTAAGTGGTGGGCTTTGAAAAAACATGTTCCTGAAAGTGATACAGTAACATTTCAAGGAATAGTCTCTTATCTATACCATACCTATATTGCGACACTGCAGAATAAAATTGAGAGGCAGGAAGCACGTTTTAAAGGGAATCATATTCCACGAGTGCCCTTGGTGCCTGGTGCAAGACCAGTTCATGTTAACCCGATATCAACAGGAACTATCACTAACTCTGGAATTTCTCATACAATATCAGTCAGTAGCGATGGTACAGTGACATCAAGAGACGACGACACCTCTCCCCTCACCACCAGTAATAAATTTGCGGTGGTACAAGTCAGTGCGCTTACACCACAAGACATGTTTCATAACGCGACCGCTGTCCAGGGAACACCATCCTACATCTTTCAAGCACCCGCAGGACAGACATACATCATACAGCAGCCAGTGAGACAGACACATACTGGAGAGCTGACGACAGGATCTGAGGGGATAGACACTAATCAACACGACCAGGAGGTGGTCACGGTTTTGCAGGCTCATCACGCTGTACAAACTCTTCCAGAGGTTGGACCTGAGTTCACACAGGCCATTGTACAAACAGATATCTCTGGACCTATTACTGCTTCTGAACTAACTAACGCAAGTCTTGGTCACGCAAAATTTGCAAAATCTGACGCGGATTTACAGGCGCGTGTCGTTGCACAGGACGATAACAACTCGGACACAGTAGACCCAACCAGCCTGGAAGCTGTGGGTGTACAAACTGTGGATAGCAATGAGCTAGACAACCATGAGGGTCTTGCTGCCTCTTTAACAGAAGGTGAACTTACAGTGGAGTCAGCTAAGGACGAGCAAGCGATAAAACAAACAAGCGAGCTGCACCTAGCTGCCTCTCATATAGGTCACTCTAAGGCTGTGTTCACAACTTCTCAGCAAACGGGGAGGGGAGAAGACAGTGTGACTTCGACAAGTGCGGTGTACACTAGTCCCCCATTTCAGGGTCCTGCGGCAATCGCTCAGACTCTAGATGGAACACATCTCCCAGAAAGACCAGTTGTACACATGCATCAAGTTGGTCCAGGAAACAGAGACGTTGTTGTCAGTCCAGATCCCTTGGGAGACGTGCACGTCACGGTCATGTCAAACATAGACACAAGCATTGCGGCTACATTATCCCCATCATCCGCCATGAGGCTTAGCCAGCATGCATTGAGTCGAAGTAACAATGCTAGCGATTTGTCTGTGAATGCTATGGTACCTCAAGTCACGCTGCCGGACGAGATCCTTCAATCGCAGTCAGACGAAGCGTCGGTGTTATCTCCGGCAGAATCAGCTAGTGTTATGATGGTGTCGGAAAACCCTATGACGGTCACGTCAACACTCCCCTCTCAAATCCTGCAATCACAGACTGATGACAATCCAAACCTGTCTGACCCCACTCCCACGTCAAACAGTACAGTCTCCGGTGGGTTAGTTGTTAATACTGCCCTGGGGAATGTTGTTACTGTCCCGGGTGGTCTGGAACACCCCGGTGACATTATGGATGCTAGCGATGTGTTGCTTCATATCGGGGGTATTTCAATCCCTATTTCGAATTCTTCTGTTACGTCAGACAAGCAAGACTGTTCAACGGAAACATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y222	Cyclin-D-binding Myb-like transcription factor 1 OS=Homo sapiens OX=9606 GN=DMTF1 PE=1 SV=1
Q66HG1	Cyclin-D-binding Myb-like transcription factor 1 OS=Rattus norvegicus OX=10116 GN=Dmtf1 PE=2 SV=2
Q8CE22	Cyclin-D-binding Myb-like transcription factor 1 OS=Mus musculus OX=10090 GN=Dmtf1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001368 (this species only)
Transcription factor family	MYB · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF20588 all species →	DMTF1_N	Cyclin-D-binding Myb-like transcription factor 1 N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR051651 all species →	Family	DMTF1 DNA-binding transcriptional regulators	Interproscan
IPR046775 all species →	Domain	Cyclin-D-binding Myb-like transcription factor 1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46380 all species →	CYCLIN-D-BINDING MYB-LIKE TRANSCRIPTION FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap10.583.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.