Detailed information of evm.model.Ap10.584 in Astrangia poculata

Genomic Location: Ap10:5868800...5911369
NR annotation: CAH3112283.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002357 (this species only)
Transcription factor familyzf-C2H2 · all TF in this species
Ubiquitin familyE3|E3 activity RING|U-box · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13639
all species →		zf-RING_2Ring finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR001510
all species →		DomainZinc finger, PARP-typeInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR036957
all species →		Homologous_superfamilyZinc finger, PARP-type superfamilyInterproscan
IPR039577
all species →		FamilyE3 ubiquitin-protein ligase Rad18Interproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14134
all species →		E3 UBIQUITIN-PROTEIN LIGASE RAD18Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0003697
all species →		Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006301
all species →		Biological Processpostreplication repairInterproscan
GO:0006513
all species →		Biological Processprotein monoubiquitinationInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0097505
all species →		Cellular ComponentRad6-Rad18 complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap10.584.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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