Gene detail

Detailed information of evm.model.Ap10.584.2.5f15dc5a in Astrangia poculata

Genomic Location: Ap10:5868800...5901570
NR annotation: CAH3112283.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.584.2.5f15dc5a

atgttcaagcgctggcgtgataaacgaaaggataacgatcagccagatagtccaacgaagacaaaccagccacaatctgtcactgaaacctccggattcatttgtccagtatgtatgatttcattcaactctccagaagatcttcaaatccattttgaaacagcacatgttgacagtgatgagccatcaccaccaccaagtggggatttcatctgtcctttatgtatgaaaagttttggtagtcctgacgagttgcagtctcattttgatcagatacatgagacagaaaatgattcagcagtggttacgccatcagttgcgccattgtcacagagtttacctccagatgctacaaggatttggagtgaaaaacatggctccttcttgtcatttgatgatgagctcccagcgccgagaaaggagtctgaggtttctctgttgtccagccagcttaaagaactagaggataaaacaaaggatattctgtatctgcagcaagagcttaacgagctaaatgcctcattgaaagaagaaaaatggtactctgctgccttgaaagaagaagttgacaagatcaccaaagaaaaggtggaattggaagagaagaacagcttactggagaaggagaagcaaactctagaaaaggaatcagaaagaaaaatcatggaggaaaaagagactagtgttaaatccatagcagagtttgcacaggtaaaggtagagttagccaaggcattagaggcccagactgggagtcagagtgagcagatgaacttggctcaaagaacttcacaactggcaacagaaaatgctggtttgaaagcagctttggaagaagaacaaagacagcagaaaggtttaagtgaagaaatcaacagattaaaggaacaactggaagataaaacaaggctcaatgaaaacttggaaaaacagctgtctcaaagaccatctggaaatgaagtaatcactttacagaatcagctgtccactgcacaacaacaggtgtcatcacttcggcaagaaaaggaggaagaacagaagtcatggcaggaaaaactcaatgcaaccttgacagaagtcaacagcttacaaatgaaagtgaaggagcttgaagtggaaaaggcatcaaaaattgagcaagtacagagtttgcagacagctataacagcatccacagaaaacagaaaacaaactcaggaacaaagccaagaacaacagcgccaccttataaacattcaacatgacctcagccaggctaatgtagttttaaaagagaaggaaacgttcattgaatatcttcaaaagcaactcaatgaaacaaaaagtaaactggattctgaggtcacattaagagaagattccaatcaacaagttcgaaacttgcaaaaccagttagaggaagaacagagacaagcccagaacagagaatcattagtgaaggaccttgaaagtaatcttcaacaaaagaaggatgatattgcaagatttgaagaagaaaggacagaccttattgctaagattgaagctggtggtggaactgaaacagtcattaatcagctcacacaagaaaaggacagttaccaggtacggctgcaacaagttgaagcttcactacaagcacaatcacaagaacattccaagaagattgaggagatgcacaaacaacagaaaaaggtagaagaggagcttgctaaagagaaagacaactctgctaagctagaaaattctgttacagaccttacatctcagtgtaggatttctttgcaacaaatggaagagtttagaaaagaagtaaaagaaaaagtgagatacttcactgtcacagttccctctagacctaaaaaaggtgtggcaaattgttatagcaaccagaggaggatgaggatgaggagtgaaagtcttgttgcccttgaagctgccaaggctgctgaaaagtctgtgttggatgaacaagtcagatcatcccaggagacattacaggagaagcttaaagaactcagtgcacttcaacaacagaatgtcaagctgaaagaagactatgaaagcataagggaaagtcataccaaacttgaaatccaggtgaagacatcagaaatggaattggaaaatcatgcaaagaggtctgctcaactggaaggtgaaattaaaggaaaggttgaggtgatgacattactgcagcaggagaaagcatcagagaaaagctcattggaaaaacagattgaggatgcccagcaatccctcaacaaaaaagaaaaggaaatattggtcgtacgaggagaattgcaagagttcaaagaaaaatctgcagagaacgttaaattgttggaaactgaaaaggagcagctgtcccttaatttgacatctacaaagaccttactggaggaaaaggagaaacttattaccaatttgggatcagatcaccaagaagcaagaaaagaaattatttcattaaaagaacaactagcctccacttcacaatcactcaaggagaagagcgatcaaatggaaaatgcaactaaacagcacttgcaagaaaagcaagctttggagtccaaattatctgaaatggacagtgctggcaagagtcaagtttcagaattgatgggatctctaaagaatgttaaagaaaaattgaaagaaaaagaggatactgaagatcatgataaaaaagttgagactccctcacaggaaaaagaaggaagcaaacaagaggaaagaaccaagaagtgcctagcagatctgaatgaagagctgttgtgttgtatctgtcgtgaactcatggtgttggcacacaccctgccttgctctcacaccttctgttttggctgcatcagagactggctggcccactccagtgattgcccaaactgcagagcaaaggctcaactaaagtcagctgtaccagtcaaggtcttagataatacaataaacaaagtagcagaggaggttctttcacccgaggagttggaggagagacagcagaagtttcaggtaagctatgtacatctaacattatccatggtaagacagggttgccacatatcaggaaatggccagggaaaaacttcttcaaggtcagggaaaagtctgggattttattttgagtctggaaaaaaaagcatttttggagaaaagtcagggaaagttaaaattgtaacacctctgatttaa

Transcript

evm.model.Ap10.584.2.5f15dc5a

ATGTTCAAGCGCTGGCGTGATAAACGAAAGGATAACGATCAGCCAGATAGTCCAACGAAGACAAACCAGCCACAATCTGTCACTGAAACCTCCGGATTCATTTGTCCAGTATGTATGATTTCATTCAACTCTCCAGAAGATCTTCAAATCCATTTTGAAACAGCACATGTTGACAGTGATGAGCCATCACCACCACCAAGTGGGGATTTCATCTGTCCTTTATGTATGAAAAGTTTTGGTAGTCCTGACGAGTTGCAGTCTCATTTTGATCAGATACATGAGACAGAAAATGATTCAGCAGTGGTTACGCCATCAGTTGCGCCATTGTCACAGAGTTTACCTCCAGATGCTACAAGGATTTGGAGTGAAAAACATGGCTCCTTCTTGTCATTTGATGATGAGCTCCCAGCGCCGAGAAAGGAGTCTGAGGTTTCTCTGTTGTCCAGCCAGCTTAAAGAACTAGAGGATAAAACAAAGGATATTCTGTATCTGCAGCAAGAGCTTAACGAGCTAAATGCCTCATTGAAAGAAGAAAAATGGTACTCTGCTGCCTTGAAAGAAGAAGTTGACAAGATCACCAAAGAAAAGGTGGAATTGGAAGAGAAGAACAGCTTACTGGAGAAGGAGAAGCAAACTCTAGAAAAGGAATCAGAAAGAAAAATCATGGAGGAAAAAGAGACTAGTGTTAAATCCATAGCAGAGTTTGCACAGGTAAAGGTAGAGTTAGCCAAGGCATTAGAGGCCCAGACTGGGAGTCAGAGTGAGCAGATGAACTTGGCTCAAAGAACTTCACAACTGGCAACAGAAAATGCTGGTTTGAAAGCAGCTTTGGAAGAAGAACAAAGACAGCAGAAAGGTTTAAGTGAAGAAATCAACAGATTAAAGGAACAACTGGAAGATAAAACAAGGCTCAATGAAAACTTGGAAAAACAGCTGTCTCAAAGACCATCTGGAAATGAAGTAATCACTTTACAGAATCAGCTGTCCACTGCACAACAACAGGTGTCATCACTTCGGCAAGAAAAGGAGGAAGAACAGAAGTCATGGCAGGAAAAACTCAATGCAACCTTGACAGAAGTCAACAGCTTACAAATGAAAGTGAAGGAGCTTGAAGTGGAAAAGGCATCAAAAATTGAGCAAGTACAGAGTTTGCAGACAGCTATAACAGCATCCACAGAAAACAGAAAACAAACTCAGGAACAAAGCCAAGAACAACAGCGCCACCTTATAAACATTCAACATGACCTCAGCCAGGCTAATGTAGTTTTAAAAGAGAAGGAAACGTTCATTGAATATCTTCAAAAGCAACTCAATGAAACAAAAAGTAAACTGGATTCTGAGGTCACATTAAGAGAAGATTCCAATCAACAAGTTCGAAACTTGCAAAACCAGTTAGAGGAAGAACAGAGACAAGCCCAGAACAGAGAATCATTAGTGAAGGACCTTGAAAGTAATCTTCAACAAAAGAAGGATGATATTGCAAGATTTGAAGAAGAAAGGACAGACCTTATTGCTAAGATTGAAGCTGGTGGTGGAACTGAAACAGTCATTAATCAGCTCACACAAGAAAAGGACAGTTACCAGGTACGGCTGCAACAAGTTGAAGCTTCACTACAAGCACAATCACAAGAACATTCCAAGAAGATTGAGGAGATGCACAAACAACAGAAAAAGGTAGAAGAGGAGCTTGCTAAAGAGAAAGACAACTCTGCTAAGCTAGAAAATTCTGTTACAGACCTTACATCTCAGTGTAGGATTTCTTTGCAACAAATGGAAGAGTTTAGAAAAGAAGTAAAAGAAAAAGTGAGATACTTCACTGTCACAGTTCCCTCTAGACCTAAAAAAGGTGTGGCAAATTGTTATAGCAACCAGAGGAGGATGAGGATGAGGAGTGAAAGTCTTGTTGCCCTTGAAGCTGCCAAGGCTGCTGAAAAGTCTGTGTTGGATGAACAAGTCAGATCATCCCAGGAGACATTACAGGAGAAGCTTAAAGAACTCAGTGCACTTCAACAACAGAATGTCAAGCTGAAAGAAGACTATGAAAGCATAAGGGAAAGTCATACCAAACTTGAAATCCAGGTGAAGACATCAGAAATGGAATTGGAAAATCATGCAAAGAGGTCTGCTCAACTGGAAGGTGAAATTAAAGGAAAGGTTGAGGTGATGACATTACTGCAGCAGGAGAAAGCATCAGAGAAAAGCTCATTGGAAAAACAGATTGAGGATGCCCAGCAATCCCTCAACAAAAAAGAAAAGGAAATATTGGTCGTACGAGGAGAATTGCAAGAGTTCAAAGAAAAATCTGCAGAGAACGTTAAATTGTTGGAAACTGAAAAGGAGCAGCTGTCCCTTAATTTGACATCTACAAAGACCTTACTGGAGGAAAAGGAGAAACTTATTACCAATTTGGGATCAGATCACCAAGAAGCAAGAAAAGAAATTATTTCATTAAAAGAACAACTAGCCTCCACTTCACAATCACTCAAGGAGAAGAGCGATCAAATGGAAAATGCAACTAAACAGCACTTGCAAGAAAAGCAAGCTTTGGAGTCCAAATTATCTGAAATGGACAGTGCTGGCAAGAGTCAAGTTTCAGAATTGATGGGATCTCTAAAGAATGTTAAAGAAAAATTGAAAGAAAAAGAGGATACTGAAGATCATGATAAAAAAGTTGAGACTCCCTCACAGGAAAAAGAAGGAAGCAAACAAGAGGAAAGAACCAAGAAGTGCCTAGCAGATCTGAATGAAGAGCTGTTGTGTTGTATCTGTCGTGAACTCATGGTGTTGGCACACACCCTGCCTTGCTCTCACACCTTCTGTTTTGGCTGCATCAGAGACTGGCTGGCCCACTCCAGTGATTGCCCAAACTGCAGAGCAAAGGCTCAACTAAAGTCAGCTGTACCAGTCAAGGTCTTAGATAATACAATAAACAAAGTAGCAGAGGAGGTTCTTTCACCCGAGGAGTTGGAGGAGAGACAGCAGAAGTTTCAGGTAAGCTATGTACATCTAACATTATCCATGGTAAGACAGGGTTGCCACATATCAGGAAATGGCCAGGGAAAAACTTCTTCAAGGTCAGGGAAAAGTCTGGGATTTTATTTTGAGTCTGGAAAAAAAAGCATTTTTGGAGAAAAGTCAGGGAAAGTTAAAATTGTAACACCTCTGATTTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002357 (this species only)
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039577 all species →	Family	E3 ubiquitin-protein ligase Rad18	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14134 all species →	E3 UBIQUITIN-PROTEIN LIGASE RAD18	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006301 all species →	Biological Process	postreplication repair	Interproscan
GO:0006513 all species →	Biological Process	protein monoubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0097505 all species →	Cellular Component	Rad6-Rad18 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap10.584.2.5f15dc5a.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.