Genomic Location: Ap10:623353...632664
NR annotation: XP_020611239.1, short transient receptor potential channel 4-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap10.60 |
| Transcript |
| evm.model.Ap10.60 |
| Protein |
| evm.model.Ap10.60 |
| UniProt accession | Description |
|---|---|
| Q9QUQ5 | Short transient receptor potential channel 4 OS=Mus musculus OX=10090 GN=Trpc4 PE=1 SV=1 |
| O35119 | Short transient receptor potential channel 4 OS=Rattus norvegicus OX=10116 GN=Trpc4 PE=1 SV=2 |
| P79100 | Short transient receptor potential channel 4 OS=Bos taurus OX=9913 GN=TRPC4 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004823 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08344 all species → | TRP_2 | Transient receptor ion channel II | Family | Interproscan |
| PF00520 all species → | Ion_trans | Ion transport protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002153 all species → | Family | Transient receptor potential channel, canonical | Interproscan |
| IPR013555 all species → | Domain | Transient receptor ion channel domain | Interproscan |
| IPR036770 all species → | Homologous_superfamily | Ankyrin repeat-containing domain superfamily | Interproscan |
| IPR005821 all species → | Domain | Ion transport domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10117 all species → | TRANSIENT RECEPTOR POTENTIAL CHANNEL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005262 all species → | Molecular Function | calcium channel activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0070588 all species → | Biological Process | calcium ion transmembrane transport | Interproscan |
| GO:0005216 all species → | Molecular Function | monoatomic ion channel activity | Interproscan |
| GO:0006811 all species → | Biological Process | monoatomic ion transport | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0015279 all species → | Molecular Function | store-operated calcium channel activity | Interproscan |
| GO:0034703 all species → | Cellular Component | cation channel complex | Interproscan |
| GO:0051480 all species → | Biological Process | regulation of cytosolic calcium ion concentration | Interproscan |
| GO:0070679 all species → | Molecular Function | inositol 1,4,5 trisphosphate binding | Interproscan |
evm.model.Ap10.60.Transcript abundance of evm.model.Ap10.60 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
