Genomic Location: Ap10:6611487...6616595
NR annotation: XP_020616818.1, elastase-1-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap10.635 |
| Transcript |
| evm.model.Ap10.635 |
| Protein |
| evm.model.Ap10.635 |
| UniProt accession | Description |
|---|---|
| P55091 | Chymotrypsin-C OS=Rattus norvegicus OX=10116 GN=Ctrc PE=1 SV=1 |
| P08217 | Chymotrypsin-like elastase family member 2A OS=Homo sapiens OX=9606 GN=CELA2A PE=1 SV=1 |
| Q3SYP2 | Chymotrypsin-C OS=Mus musculus OX=10090 GN=Ctrc PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000031 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00089 all species → | Trypsin | Trypsin | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR043504 all species → | Homologous_superfamily | Peptidase S1, PA clan, chymotrypsin-like fold | Interproscan |
| IPR001254 all species → | Domain | Serine proteases, trypsin domain | Interproscan |
| IPR009003 all species → | Homologous_superfamily | Peptidase S1, PA clan | Interproscan |
| IPR001314 all species → | Family | Peptidase S1A, chymotrypsin family | Interproscan |
| IPR033116 all species → | Active_site | Serine proteases, trypsin family, serine active site | Interproscan |
| IPR018114 all species → | Active_site | Serine proteases, trypsin family, histidine active site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24250 all species → | CHYMOTRYPSIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004252 all species → | Molecular Function | serine-type endopeptidase activity | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
evm.model.Ap10.635.Transcript abundance of evm.model.Ap10.635 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
