Gene detail

Detailed information of evm.model.Ap10.766 in Astrangia poculata

Genomic Location: Ap10:8220653...8239986
NR annotation: XP_020610275.1, supervillin-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.766

atgtctgaggatacgggtgaaagaatctctagaattgaagcaagaagaaagagaagggagcagaggagacttagccttgatacagatgaggaaaataaaccagtgaatggagttgatgaaaatggtggtggtggccggtctcgttcatcaacagctgacagtgatgctgagctatcgagggctttaactcgtgaagaaaagaggcaagagaggcgtgagaagaaaaggcagctagaaatggcagaaaaatcaaaagaagctaagtcagctgcagttataacagactttagcaaaagagaaatacgtgaaaggagacccagtgaccctgaaattctgtctggagatagtgaaagtgttgatgatactgacaaagagaatgaacagcgcaatgcacagaaaggaggagagagaaagaaatcaggttatggctcttatgcatctgctattcgccgaggatcacaaggtactgatgtcgacaaaaggaaagagcggtatgctgctgctgttgagggatacaatattaatgatgacgacgatgatgacatggaattgtctcctcgcgatcctagtagggaccagccacccgaggttttgtccacttcacctgttagaagaataaaagaagattatttgacctcggcatcaggagctggcagggaggtaccacactcagaggaacaaccgacaccacatcaccttgctaagcagtggccccctccaccttcttctgaggatgaccaggatgatgaaagaaatggggaaccacggaaaggcgtagtgaagacatttgaggagccggagcctacagaagaagatagaggagttgatgaaggccatgttgagtcagtaaagtcactgaaaaatcagtggcagaagaaggaaccatcaaagccgctgggcgtcaacaaaccatacgtacccatgaagagagatgacatgtggatcacccattataaacctgttattgacgaaggagaagcaccaaaggagccagcctggttacaaatggtgcggcaacggaggtggagatcaactgtatcagcacgctttcctcaaactgaagaagagaagcaagtgtttgaaaatcgttccacaaccccaagaaaattcaagaagccgaatcctcacagtctgatgcgatcaaagtctgaccttgatgacgaatttgaaatagccatgaggcgacgacgacgaaggaccgacgacgaagactctgtggatgctagtaagcgttcatggtcctccttaactgatgctgaccaggattctgtagcagtattaaacaaagttcctatctcagggcccttgaaagagtataagaaaaacctggcattagaaagggcacgtacaaccatgttgaaatggacattttcgacagacatggttgatgatccttatcgatttgatcttcccaagcccattgacctgacaacacaggaagactacgagagggaacaggagtggaaatatatgcagtctcgcaagcgattcatgagtggaagtgaggctgaaggtatgggaacctcatctatgcgatcatcaatgtcatccttgagtgacggagaacaccccaagtcaccagtcagtggcacacctgcgcaaccagagcaaaggacatctgttagttcagatgagacacccctaagtcccgaggcagcacactctatgcctgttgattcaggcgaggatatcaagttccgtcgtggagtctcagacattaagaaaaatttgatgactgcaagtgaagaggcacctttaaaacccacgatcgctgatgacaacctggaatatgtccccaaactggctgatttgaggaaaaaattgcatgagagagaggaggagccggtaccaaaatcaacccctttggatgaagaaattcagatcattccaaaggtaaaggacattaaaagcaaatatctaactccaagaaaagaagaccaagtttccaaaaacccagaatttgaagaaggggaacagtttgaaagattggatagcattaagagcaagtttcaagctaaagagaaggaaagtgagccaaaaggtttaagcaagcctaagcttaagaagaagttgagcactagtgatgatatgaaagcgatgatggccagtcggcgacaaatgacagatgagtttgtcagtgagagcccagagactgctcaagaaatcaaaagcttggcatcagacattgccaagacatttggttcggaaggtagcgattctccaaagcagccagcaggaaagagaaagaaagacaagagagagatagaagaggggaaatcagtggatagtgtggctactacttctgaagaaagcgacacccaacagttaggcccttgtggtaagcctgaaggatgtggaacagatgatgagcttgacaagcgtctgagcaaggagctcgagattttaccaacccttggaggtgaactgaatgaagaaccagagtccattgctttcaaagacaaggtggctcaagatgaatcggccgctttagagagtgtaccgcaaagagattcatttactgatgaaggtgatagtgtggtcagtggagacgacaaggcaataaggaagcaagaatcaatggataccgtggaaacatcagctaaggaaagtgactctgaaagtgaagatgaaacagatgccaaaaaacaagtcaaagatgaagatgatgaagaagacttcttgagctcggaaagtgaaaatgacaaagaacaacaacaacaagatgatgatgatgatgatgatgaggaggaggaggaacaagatctaccagaaaaagctgttgaaaaagttgacgggaacaccaagtctcgcttatccactgacagacctctatcatacaatatggaggatgtcagaacaaggaaacttatcaaggaggatgatgagagaccaaagtctttcacatttggcgaggaagaaagtggagaggatcctttcatctcttccaacttaaaggcattttcagaccaaagaaggaaaatcaagccagccagacggcatgcagctagtagcaaccctgtgcggcagcggcagaacagagatgacctgagaactgaaacagatattctcaggatccgtgaagaagaaaaaccctcacttgctggcaagaaaaaaaaagagaaagcttttactgatgaagctatggctggtttgtccagcacagaggatctggctgccgcgagcactgccttgagaaagacagccaaagactcctctggagtaagcacagagatcaaagactttggaggatttctacctgtcatgctgttacagatcaaaggtgcaaggcacatccagaccagactagttgaaccttccatcaagtcgctcaattctggtgatgtgtttgtgttagtgactccaaaggaggttcatttgtggaatggaaaggatgcaagtgtaatgaaaaaagctaagggaatggaagtttccactataattgtcaagcagaaggacttgggctgcaatgcggcaaaagttcacatcatggatcaagaccttgagacaagtgatgctctaacacgactcttctggaagacattagggggcaaagctgatgtcgcagatgccaaagattttccttcagatgaagagcacgaaaaaggcttgataaagaccaatgcaatctacagagtcaactgtacatctgacccccctgaactggtcctgcgtgatgatctgtcaggccgtattcttagtgcaaatttgatggataattcacaggcctatgttgtcgactttggagcagaggtgtacctttggcttggtagaaattgtcacaatctggcacgagcgaagggtgtggccctcgcacaagatctctttaatggaccattcaagttcaaaagtaccatcaacccaatagaccccaaaactaaatctgagggtcttcctaagatgacagaagtcagccgaccttcatgggccctgtttggccgtatgacagcacgttccgagacggttctcttcagagaaaagttcattgattggccagatcataatatcgactacacccaggattttgttaaacaacctataagtgggagtttcactgatctctccgagcaggcctatggtgaaaacagggattttaaacctcgtggcaaaaagaagcgtccaaacagcatatttgagatgaagccgtgtgagccagacaacttgatagagtctcccccagaaccgagcttgattctcgaaggttttgatgtggggcgtggcacaggaagctttgatgaagaaggaagacggtttattgttgattcgatttccatgaaaatctggcatgtcaaggaatattcctatcagttgcttcctgaagaggaatatggccatttcttctcgtcggaaggttacgttgtaaggtggaagtactgcgtgaaactaacaggcgtaaagacattgaagggtaaacagtctcggtatgaagatgtcgggcgtgataaggtggcttacttcttctggcaaggacaagacagcactctgaatgagaaaggaactgctgcactgatgactgttgagttggactcagataaaggaccccaggtcctggtctctcaaggcaaggagcctccttgtttcaccagattgtttgaaggaaagatggtcgttcacttaggaaatgcatcgtccctgaggtcgcgaacatcgtttgtggttgcagacaacaagaaatcactcttgaatgcctggcacggcagcaaatccccttcttccacgaaagaaatagctgtgtctgctacaaaaagactaaaaaagtggtttaataaacaatattccaaagaatataaagccaaagaggtctccgaaggagaggaaagcaaagagttttggaacgttcttggtggaaaagcaggctttatgccactaagtggagattcggagaaacatgactatacgttgcgcgttttcaacttaaagagtacaagtggttcgtttgaggcgactgaagtgctgaacccgggaagatcggaacaaatcactccctacccgattctgcaatcacaactgtatgctgcggatcaaccagccttgtttatggtggacgcagtacacgtgatttatctctggcacggctggtggccgcagagtgatgaagattccgactcaagagcctccacaacaggctccgcagagacgcgatggagtaacgacagaaggctggctatggagactatcaaatcttacgctgaagaattgaagcgtgatttttctcaagtatttattgtgttcgctggcctggaaccaaagtcgttcaagaatcttttcccattctgggaggatcggcctgatgtgggcaaattaaaccaagcgactggagcagctgacggtgacacattaaaagtggaggcagagcttgccaagctctcaaggacggagtataccttagaagaactgaagcaaaaaccaccccctgaaggagttgatccctccagacttgattcgtatctgaatgctgatgactttcagaaagcgtttaacatgaccagagacgcatttgacgtactgccaatgtggaagaagacaaatctcaggaaaaaagctggccttttctaa

Transcript

evm.model.Ap10.766

ATGTCTGAGGATACGGGTGAAAGAATCTCTAGAATTGAAGCAAGAAGAAAGAGAAGGGAGCAGAGGAGACTTAGCCTTGATACAGATGAGGAAAATAAACCAGTGAATGGAGTTGATGAAAATGGTGGTGGTGGCCGGTCTCGTTCATCAACAGCTGACAGTGATGCTGAGCTATCGAGGGCTTTAACTCGTGAAGAAAAGAGGCAAGAGAGGCGTGAGAAGAAAAGGCAGCTAGAAATGGCAGAAAAATCAAAAGAAGCTAAGTCAGCTGCAGTTATAACAGACTTTAGCAAAAGAGAAATACGTGAAAGGAGACCCAGTGACCCTGAAATTCTGTCTGGAGATAGTGAAAGTGTTGATGATACTGACAAAGAGAATGAACAGCGCAATGCACAGAAAGGAGGAGAGAGAAAGAAATCAGGTTATGGCTCTTATGCATCTGCTATTCGCCGAGGATCACAAGGTACTGATGTCGACAAAAGGAAAGAGCGGTATGCTGCTGCTGTTGAGGGATACAATATTAATGATGACGACGATGATGACATGGAATTGTCTCCTCGCGATCCTAGTAGGGACCAGCCACCCGAGGTTTTGTCCACTTCACCTGTTAGAAGAATAAAAGAAGATTATTTGACCTCGGCATCAGGAGCTGGCAGGGAGGTACCACACTCAGAGGAACAACCGACACCACATCACCTTGCTAAGCAGTGGCCCCCTCCACCTTCTTCTGAGGATGACCAGGATGATGAAAGAAATGGGGAACCACGGAAAGGCGTAGTGAAGACATTTGAGGAGCCGGAGCCTACAGAAGAAGATAGAGGAGTTGATGAAGGCCATGTTGAGTCAGTAAAGTCACTGAAAAATCAGTGGCAGAAGAAGGAACCATCAAAGCCGCTGGGCGTCAACAAACCATACGTACCCATGAAGAGAGATGACATGTGGATCACCCATTATAAACCTGTTATTGACGAAGGAGAAGCACCAAAGGAGCCAGCCTGGTTACAAATGGTGCGGCAACGGAGGTGGAGATCAACTGTATCAGCACGCTTTCCTCAAACTGAAGAAGAGAAGCAAGTGTTTGAAAATCGTTCCACAACCCCAAGAAAATTCAAGAAGCCGAATCCTCACAGTCTGATGCGATCAAAGTCTGACCTTGATGACGAATTTGAAATAGCCATGAGGCGACGACGACGAAGGACCGACGACGAAGACTCTGTGGATGCTAGTAAGCGTTCATGGTCCTCCTTAACTGATGCTGACCAGGATTCTGTAGCAGTATTAAACAAAGTTCCTATCTCAGGGCCCTTGAAAGAGTATAAGAAAAACCTGGCATTAGAAAGGGCACGTACAACCATGTTGAAATGGACATTTTCGACAGACATGGTTGATGATCCTTATCGATTTGATCTTCCCAAGCCCATTGACCTGACAACACAGGAAGACTACGAGAGGGAACAGGAGTGGAAATATATGCAGTCTCGCAAGCGATTCATGAGTGGAAGTGAGGCTGAAGGTATGGGAACCTCATCTATGCGATCATCAATGTCATCCTTGAGTGACGGAGAACACCCCAAGTCACCAGTCAGTGGCACACCTGCGCAACCAGAGCAAAGGACATCTGTTAGTTCAGATGAGACACCCCTAAGTCCCGAGGCAGCACACTCTATGCCTGTTGATTCAGGCGAGGATATCAAGTTCCGTCGTGGAGTCTCAGACATTAAGAAAAATTTGATGACTGCAAGTGAAGAGGCACCTTTAAAACCCACGATCGCTGATGACAACCTGGAATATGTCCCCAAACTGGCTGATTTGAGGAAAAAATTGCATGAGAGAGAGGAGGAGCCGGTACCAAAATCAACCCCTTTGGATGAAGAAATTCAGATCATTCCAAAGGTAAAGGACATTAAAAGCAAATATCTAACTCCAAGAAAAGAAGACCAAGTTTCCAAAAACCCAGAATTTGAAGAAGGGGAACAGTTTGAAAGATTGGATAGCATTAAGAGCAAGTTTCAAGCTAAAGAGAAGGAAAGTGAGCCAAAAGGTTTAAGCAAGCCTAAGCTTAAGAAGAAGTTGAGCACTAGTGATGATATGAAAGCGATGATGGCCAGTCGGCGACAAATGACAGATGAGTTTGTCAGTGAGAGCCCAGAGACTGCTCAAGAAATCAAAAGCTTGGCATCAGACATTGCCAAGACATTTGGTTCGGAAGGTAGCGATTCTCCAAAGCAGCCAGCAGGAAAGAGAAAGAAAGACAAGAGAGAGATAGAAGAGGGGAAATCAGTGGATAGTGTGGCTACTACTTCTGAAGAAAGCGACACCCAACAGTTAGGCCCTTGTGGTAAGCCTGAAGGATGTGGAACAGATGATGAGCTTGACAAGCGTCTGAGCAAGGAGCTCGAGATTTTACCAACCCTTGGAGGTGAACTGAATGAAGAACCAGAGTCCATTGCTTTCAAAGACAAGGTGGCTCAAGATGAATCGGCCGCTTTAGAGAGTGTACCGCAAAGAGATTCATTTACTGATGAAGGTGATAGTGTGGTCAGTGGAGACGACAAGGCAATAAGGAAGCAAGAATCAATGGATACCGTGGAAACATCAGCTAAGGAAAGTGACTCTGAAAGTGAAGATGAAACAGATGCCAAAAAACAAGTCAAAGATGAAGATGATGAAGAAGACTTCTTGAGCTCGGAAAGTGAAAATGACAAAGAACAACAACAACAAGATGATGATGATGATGATGATGAGGAGGAGGAGGAACAAGATCTACCAGAAAAAGCTGTTGAAAAAGTTGACGGGAACACCAAGTCTCGCTTATCCACTGACAGACCTCTATCATACAATATGGAGGATGTCAGAACAAGGAAACTTATCAAGGAGGATGATGAGAGACCAAAGTCTTTCACATTTGGCGAGGAAGAAAGTGGAGAGGATCCTTTCATCTCTTCCAACTTAAAGGCATTTTCAGACCAAAGAAGGAAAATCAAGCCAGCCAGACGGCATGCAGCTAGTAGCAACCCTGTGCGGCAGCGGCAGAACAGAGATGACCTGAGAACTGAAACAGATATTCTCAGGATCCGTGAAGAAGAAAAACCCTCACTTGCTGGCAAGAAAAAAAAAGAGAAAGCTTTTACTGATGAAGCTATGGCTGGTTTGTCCAGCACAGAGGATCTGGCTGCCGCGAGCACTGCCTTGAGAAAGACAGCCAAAGACTCCTCTGGAGTAAGCACAGAGATCAAAGACTTTGGAGGATTTCTACCTGTCATGCTGTTACAGATCAAAGGTGCAAGGCACATCCAGACCAGACTAGTTGAACCTTCCATCAAGTCGCTCAATTCTGGTGATGTGTTTGTGTTAGTGACTCCAAAGGAGGTTCATTTGTGGAATGGAAAGGATGCAAGTGTAATGAAAAAAGCTAAGGGAATGGAAGTTTCCACTATAATTGTCAAGCAGAAGGACTTGGGCTGCAATGCGGCAAAAGTTCACATCATGGATCAAGACCTTGAGACAAGTGATGCTCTAACACGACTCTTCTGGAAGACATTAGGGGGCAAAGCTGATGTCGCAGATGCCAAAGATTTTCCTTCAGATGAAGAGCACGAAAAAGGCTTGATAAAGACCAATGCAATCTACAGAGTCAACTGTACATCTGACCCCCCTGAACTGGTCCTGCGTGATGATCTGTCAGGCCGTATTCTTAGTGCAAATTTGATGGATAATTCACAGGCCTATGTTGTCGACTTTGGAGCAGAGGTGTACCTTTGGCTTGGTAGAAATTGTCACAATCTGGCACGAGCGAAGGGTGTGGCCCTCGCACAAGATCTCTTTAATGGACCATTCAAGTTCAAAAGTACCATCAACCCAATAGACCCCAAAACTAAATCTGAGGGTCTTCCTAAGATGACAGAAGTCAGCCGACCTTCATGGGCCCTGTTTGGCCGTATGACAGCACGTTCCGAGACGGTTCTCTTCAGAGAAAAGTTCATTGATTGGCCAGATCATAATATCGACTACACCCAGGATTTTGTTAAACAACCTATAAGTGGGAGTTTCACTGATCTCTCCGAGCAGGCCTATGGTGAAAACAGGGATTTTAAACCTCGTGGCAAAAAGAAGCGTCCAAACAGCATATTTGAGATGAAGCCGTGTGAGCCAGACAACTTGATAGAGTCTCCCCCAGAACCGAGCTTGATTCTCGAAGGTTTTGATGTGGGGCGTGGCACAGGAAGCTTTGATGAAGAAGGAAGACGGTTTATTGTTGATTCGATTTCCATGAAAATCTGGCATGTCAAGGAATATTCCTATCAGTTGCTTCCTGAAGAGGAATATGGCCATTTCTTCTCGTCGGAAGGTTACGTTGTAAGGTGGAAGTACTGCGTGAAACTAACAGGCGTAAAGACATTGAAGGGTAAACAGTCTCGGTATGAAGATGTCGGGCGTGATAAGGTGGCTTACTTCTTCTGGCAAGGACAAGACAGCACTCTGAATGAGAAAGGAACTGCTGCACTGATGACTGTTGAGTTGGACTCAGATAAAGGACCCCAGGTCCTGGTCTCTCAAGGCAAGGAGCCTCCTTGTTTCACCAGATTGTTTGAAGGAAAGATGGTCGTTCACTTAGGAAATGCATCGTCCCTGAGGTCGCGAACATCGTTTGTGGTTGCAGACAACAAGAAATCACTCTTGAATGCCTGGCACGGCAGCAAATCCCCTTCTTCCACGAAAGAAATAGCTGTGTCTGCTACAAAAAGACTAAAAAAGTGGTTTAATAAACAATATTCCAAAGAATATAAAGCCAAAGAGGTCTCCGAAGGAGAGGAAAGCAAAGAGTTTTGGAACGTTCTTGGTGGAAAAGCAGGCTTTATGCCACTAAGTGGAGATTCGGAGAAACATGACTATACGTTGCGCGTTTTCAACTTAAAGAGTACAAGTGGTTCGTTTGAGGCGACTGAAGTGCTGAACCCGGGAAGATCGGAACAAATCACTCCCTACCCGATTCTGCAATCACAACTGTATGCTGCGGATCAACCAGCCTTGTTTATGGTGGACGCAGTACACGTGATTTATCTCTGGCACGGCTGGTGGCCGCAGAGTGATGAAGATTCCGACTCAAGAGCCTCCACAACAGGCTCCGCAGAGACGCGATGGAGTAACGACAGAAGGCTGGCTATGGAGACTATCAAATCTTACGCTGAAGAATTGAAGCGTGATTTTTCTCAAGTATTTATTGTGTTCGCTGGCCTGGAACCAAAGTCGTTCAAGAATCTTTTCCCATTCTGGGAGGATCGGCCTGATGTGGGCAAATTAAACCAAGCGACTGGAGCAGCTGACGGTGACACATTAAAAGTGGAGGCAGAGCTTGCCAAGCTCTCAAGGACGGAGTATACCTTAGAAGAACTGAAGCAAAAACCACCCCCTGAAGGAGTTGATCCCTCCAGACTTGATTCGTATCTGAATGCTGATGACTTTCAGAAAGCGTTTAACATGACCAGAGACGCATTTGACGTACTGCCAATGTGGAAGAAGACAAATCTCAGGAAAAAAGCTGGCCTTTTCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O46385	Supervillin OS=Bos taurus OX=9913 GN=SVIL PE=1 SV=2
Q8K4L3	Supervillin OS=Mus musculus OX=10090 GN=Svil PE=1 SV=1
O95425	Supervillin OS=Homo sapiens OX=9606 GN=SVIL PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001059 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00626 all species →	Gelsolin	Gelsolin repeat	Domain	Interproscan
PF02209 all species →	VHP	Villin headpiece domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029006 all species →	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan
IPR003128 all species →	Domain	Villin headpiece	Interproscan
IPR036886 all species →	Homologous_superfamily	Villin headpiece domain superfamily	Interproscan
IPR007123 all species →	Domain	Gelsolin-like domain	Interproscan
IPR007122 all species →	Family	Villin/Gelsolin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11977 all species →	VILLIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008154 all species →	Biological Process	actin polymerization or depolymerization	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0051014 all species →	Biological Process	actin filament severing	Interproscan
GO:0051016 all species →	Biological Process	barbed-end actin filament capping	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10369	SVIL; supervillin	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.