Gene detail

Detailed information of evm.model.Ap10.773 in Astrangia poculata

Genomic Location: Ap10:8295299...8306517
NR annotation: XP_020617958.1, exonuclease 3'-5' domain-containing protein 2-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.773

atggagccatccgcaaagagtacagcgaacgtaggtccaacgagggcgagaaataacgcgaaattgtgtatcaatgccggcgaaatcaccgctataaaccgaaacagatctctcgaaagatcaaaagacggcaaacgattgagcttatattcatacattggaacagttgggatttctcttttgatatttctacgatggtttcttggcattgttcttcttggccccgcgcaacatgtgtggagaacatttgatcgcaactttacacgaagaaaggcgaagacctcgcgtgtttttgtcgttgacagtgctttgtcgtgtgaaaaacttctgcagtcgtaccgatcaaagtatccgtttaaattgaattttcttggaatggactgcgaatgggtgaacaagaaagggcaaacaaacgctccagttgctctgttacaaattgcaactcctttgagcgattgctttcttattcgattgtgtaaaatggatggccatctgcctaagactgtgagagaaatcttggaggacaagagtattcttaaatttggtgtcggcattaaggatgatgcaaagagactgtgtggaatgtttggtgttactgtgcagggttgtgtggacctgcggcacgtgatacagagatgcagagtagagagcagtgttcagtcaaggaaccagaagacgagtttagatgcattagccaagagaattcttggtgtcaccatggacaagtcttggaggattcgttgtagcaactgggaagcagaacagtttgacagaagacagattgaatatgcaatgaatgatgccttagttgcaagtcacatgtttcttagactggtaaaatcaaaggcagaggagagaaaagtgcttagaactgctttcatctcagaggattccatttgcgtcgaaaataatgccagtggaaattctgcatcagggttaaatcagggcatgacagacagtaaagtgccagagtctataaagaatttgtcacacaatgacatcacaagtggaagtgaagtgtataactcgactttgatcgacggagtatctgatctcgcaccttccagcaaaacaagtaatgactctgtatcagaggtaatacaagaacatgaagggtgcatggaaaacagtaatcaagaggatttgaacaatgttaactttgacgataagcaagaaggctcttttggagcacagggcaatgaaagtgattctaaaaaccatggtcaagctttaaaggatttcaaagatttcagccatggattaatgtttgatgtagaatctgatgtttataatatcatggcagatcttagcaaatgggagtctagatatgaagaagacgagggatatctcaccagggaagaagccattgatcttttacaagactctttcttttgtcaaagagcaagttctctctgccagggagtcgtcgatcttgcattcaaagataagaaaagaaaagctccaactaaggaaaatgacaaaaagaaagatgatgccgagacccaaatatctaatagtctaaaaccttacaagagaggcattggaagaaaatctccactttacatgaactgtatgcttgctgcccctgatgggtcaaggttgtgcacactagatcgtaagaaggcagattggtatattaaaaggggaattgggaaactgacctgccttgatccttacacagtccagctgaagtttgaaccctcagggagaccaggaacggaagattcttactacctcaatttcaaggacaacatttgtgttgtgtgtggaagcgatcagagctacatgagaaagaacattgttccacacgactaccgacgattttttccacttgtcattaaagccaatcactctcatgatgtactgctaatgtgccctgaatgtcaccgtatgtccgccttttatgatgacaagctaagaagggaactggcaaacaagtatgatgctccgcttggaaatgccactgtagctcgcctcattgaagatccagagctgaagaaagtcaagtcagctgcaaaggcattgaattttgctgcagccaaacttccaccagacaggcaccaacaactctcgcttattgtccaggagtacttcaacgttaccgacctaactccagagatgatcacagaggccgcaacaatggaaacccgcagggagaactcaaattttgtttcgcatgggcaagaggtcgtgaaaaaggtccgcaaagcaggaaaactgcttgagtttgagaaaacatggagacaacattttctggacactatgcgcccgcagtgcctaccacccttgtggtcagtggatcatcgtcatgatggcttgaaagaaaagctggaagatttgaacgatagttaa

Transcript

evm.model.Ap10.773

ATGGAGCCATCCGCAAAGAGTACAGCGAACGTAGGTCCAACGAGGGCGAGAAATAACGCGAAATTGTGTATCAATGCCGGCGAAATCACCGCTATAAACCGAAACAGATCTCTCGAAAGATCAAAAGACGGCAAACGATTGAGCTTATATTCATACATTGGAACAGTTGGGATTTCTCTTTTGATATTTCTACGATGGTTTCTTGGCATTGTTCTTCTTGGCCCCGCGCAACATGTGTGGAGAACATTTGATCGCAACTTTACACGAAGAAAGGCGAAGACCTCGCGTGTTTTTGTCGTTGACAGTGCTTTGTCGTGTGAAAAACTTCTGCAGTCGTACCGATCAAAGTATCCGTTTAAATTGAATTTTCTTGGAATGGACTGCGAATGGGTGAACAAGAAAGGGCAAACAAACGCTCCAGTTGCTCTGTTACAAATTGCAACTCCTTTGAGCGATTGCTTTCTTATTCGATTGTGTAAAATGGATGGCCATCTGCCTAAGACTGTGAGAGAAATCTTGGAGGACAAGAGTATTCTTAAATTTGGTGTCGGCATTAAGGATGATGCAAAGAGACTGTGTGGAATGTTTGGTGTTACTGTGCAGGGTTGTGTGGACCTGCGGCACGTGATACAGAGATGCAGAGTAGAGAGCAGTGTTCAGTCAAGGAACCAGAAGACGAGTTTAGATGCATTAGCCAAGAGAATTCTTGGTGTCACCATGGACAAGTCTTGGAGGATTCGTTGTAGCAACTGGGAAGCAGAACAGTTTGACAGAAGACAGATTGAATATGCAATGAATGATGCCTTAGTTGCAAGTCACATGTTTCTTAGACTGGTAAAATCAAAGGCAGAGGAGAGAAAAGTGCTTAGAACTGCTTTCATCTCAGAGGATTCCATTTGCGTCGAAAATAATGCCAGTGGAAATTCTGCATCAGGGTTAAATCAGGGCATGACAGACAGTAAAGTGCCAGAGTCTATAAAGAATTTGTCACACAATGACATCACAAGTGGAAGTGAAGTGTATAACTCGACTTTGATCGACGGAGTATCTGATCTCGCACCTTCCAGCAAAACAAGTAATGACTCTGTATCAGAGGTAATACAAGAACATGAAGGGTGCATGGAAAACAGTAATCAAGAGGATTTGAACAATGTTAACTTTGACGATAAGCAAGAAGGCTCTTTTGGAGCACAGGGCAATGAAAGTGATTCTAAAAACCATGGTCAAGCTTTAAAGGATTTCAAAGATTTCAGCCATGGATTAATGTTTGATGTAGAATCTGATGTTTATAATATCATGGCAGATCTTAGCAAATGGGAGTCTAGATATGAAGAAGACGAGGGATATCTCACCAGGGAAGAAGCCATTGATCTTTTACAAGACTCTTTCTTTTGTCAAAGAGCAAGTTCTCTCTGCCAGGGAGTCGTCGATCTTGCATTCAAAGATAAGAAAAGAAAAGCTCCAACTAAGGAAAATGACAAAAAGAAAGATGATGCCGAGACCCAAATATCTAATAGTCTAAAACCTTACAAGAGAGGCATTGGAAGAAAATCTCCACTTTACATGAACTGTATGCTTGCTGCCCCTGATGGGTCAAGGTTGTGCACACTAGATCGTAAGAAGGCAGATTGGTATATTAAAAGGGGAATTGGGAAACTGACCTGCCTTGATCCTTACACAGTCCAGCTGAAGTTTGAACCCTCAGGGAGACCAGGAACGGAAGATTCTTACTACCTCAATTTCAAGGACAACATTTGTGTTGTGTGTGGAAGCGATCAGAGCTACATGAGAAAGAACATTGTTCCACACGACTACCGACGATTTTTTCCACTTGTCATTAAAGCCAATCACTCTCATGATGTACTGCTAATGTGCCCTGAATGTCACCGTATGTCCGCCTTTTATGATGACAAGCTAAGAAGGGAACTGGCAAACAAGTATGATGCTCCGCTTGGAAATGCCACTGTAGCTCGCCTCATTGAAGATCCAGAGCTGAAGAAAGTCAAGTCAGCTGCAAAGGCATTGAATTTTGCTGCAGCCAAACTTCCACCAGACAGGCACCAACAACTCTCGCTTATTGTCCAGGAGTACTTCAACGTTACCGACCTAACTCCAGAGATGATCACAGAGGCCGCAACAATGGAAACCCGCAGGGAGAACTCAAATTTTGTTTCGCATGGGCAAGAGGTCGTGAAAAAGGTCCGCAAAGCAGGAAAACTGCTTGAGTTTGAGAAAACATGGAGACAACATTTTCTGGACACTATGCGCCCGCAGTGCCTACCACCCTTGTGGTCAGTGGATCATCGTCATGATGGCTTGAAAGAAAAGCTGGAAGATTTGAACGATAGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NVH0	Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens OX=9606 GN=EXD2 PE=1 SV=2
Q9VGN7	Exonuclease 3'-5' domain-containing protein 2 OS=Drosophila melanogaster OX=7227 GN=Exd2 PE=2 SV=2
Q8VEG4	Exonuclease 3'-5' domain-containing protein 2 OS=Mus musculus OX=10090 GN=Exd2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002464 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01612 all species →	DNA_pol_A_exo1	3'-5' exonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051132 all species →	Family	3'-5' Exonuclease domain-containing protein	Interproscan
IPR002562 all species →	Domain	3'-5' exonuclease domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13620 all species →	3-5 EXONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20777	EXD2; exonuclease 3'-5' domain-containing protein 2	EC:3.1.11.1	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.