Gene detail

Detailed information of evm.model.Ap10.80 in Astrangia poculata

Genomic Location: Ap10:937185...951869
NR annotation: KAJ7354902.1, hypothetical protein OS493_029462 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.80

atgaacgcgaatgtaaacaacctatttttggaggtacaagaaccgtcaacaagctgctcccagaaaagaccctcgaaatctcgttctcgagtttgggaaaaggttgtttggtttacgagaaaggcaaaaggagtcaaagataataaaaacacctcccctgaggtgcaacagagcaataataatactaatgtggactgtgctgtcagtaactgcaaaacacttggagtagaaaaatccgacaacaagcaaaaagtacgcaagacacgaagcttcaagtatctgaaacgacgaaaagtaaggcagtttggacatgaactgagctcagaagcagtcgaagaagaagtcaatgtgcaggactgcggtacagcaaccggaacctttcatgattttcagtccaaacgacgaatatcccggcacgaaagaacaacaagtaataacagtctgcttagtgagatagcgaggggaatgaactcttcacaacaaaaagtcccggaaaatgttaaaagcgccttatctctaccgctagacgacttgtcattaagcgagggcccaatttctgatagtttatctccgaattttccacgagtgaggcgaagtgttagtttttccgggccggcttacaacagctggccaaggaagaagcgaacatacttgagaaattccggttcccgatttgagctcctatcaccccctatgaagcaaaaatgcgtgtctgggataaggaagagagcatcatttagtggatttgattcatctaagataaatttgaagaattcttatttatctctgtataagggggtcaaaagtacccctcatttaccccagggaggtcacatcagaaaccagaatggtctaactatcggtgctattcatttctacaaaagcccagctatttatcaaaaggacgagacaactcttaaactctttcagagaaagagtcagacaagacaagcagatgacgagtcagatgtctacgggtcaacaaatgggtcagaaatgggaaaggacagaacgatagatactgtgttaccaagagaatcagacacgattagttttacaatttctgaaacaaatgaaaacagtaataatatagctaactgtagtatgtcgggtgaacacaattgccaaagtaactcgacttgcgaaggacagaccagcagcaatgatgtcaccaacagtacaaataactgcctttctttccacatcaaaagcagcgacatgcaaaattctaccatctctgcttttttgttagagggagaatgctctagtagctgctgtatgacaactagtccagttgattcttctgacgaggattctgtcaaggaaaagccgttggtgtcagccgagaaagggacacctgtcaattctactgatgaaagcattctcacaagagataatggtattaattacacagttttagaatcaaacattcatgaaaatgggcccataagaagacttagcaatgggtctgatgaagctatggacatccctgagtattatgccgaaacctctgagtttgaaactaagggaaatgtatcatgttcaccacagattcaccaggacaacacactccctgtcactgtgtctgatgtaatttcagctcataacaaagaaaacactgacattttaaatgcaactcaacatgacacatgcagaactgtggctcttagctctctaccgacagttgacgaagtccgtaaagttgacatgactcccactatttcttgttcctatggcaacccacaaactttgcagacaggaaataaaatgctgtggcagagaaagccgacagtcagtggggaacagtttaaaaagtacacagaggatattttgcagtggtttagggaatttaatgatgagcagaagaacatattaatcaaacgtcttttggaagaatgtgagttaccccagatgcatatgctgtctgttgcaatggaacccctactgcacaagagctgtccacccaattgccaagacatgttatcttggttgccacaccatgttgctttacatgttctgtcatttcttgattcagtgagtttgtgccgctgcagtcaagtcaatcgcacatggaacaatttagctagcagtcctttattgtggcagaatctgtgtggacggcccaactggcaattgtcaaggatcggagaagagaaggaaaagaagaagtacactatgaaagacggaacagtgcagtggaagaagatgtttgcatcaagattccttttacatcagaactggttaaaaggaaaatgtgatgtgcggacatttgaaggtcacacacaaggtatctcatgtgttcagtttgatgacacaaggattgcaagcggctcatatgacaagacaatacgagtgtgggatattcagagtggtgactgcaatgctgtgctcactctagctggtcactctgggacagtccgatgtctaaatctgaatggtaaccgactcgttagtggttctgtggatagatccatcaaggtgtgggatttgtcatttgaatcatactggagtggtgcttcatgtaaagtcaccatggtgggtcacatgcacacagttcgctgtctccaggttgatgacaagaaggtggtgagtggatcttacgataaaacactcaaagtttgggatatcaagactggaaattgccagctaactctcaggggtcacaacgctgctgtcctgtgcgttcagtttgatgagaggaaaattgtctctggatcatatgacaagaccattaaggtgtggagtctgacagaaggttcatgtctaatgacactaacaggccatcatgatgctgttacttgtttgaatttaacatttgacagcaggaaagtcattagtggctctctggaccataatctgaaattttgggatctgctgaatggaaagtgtattggtacattagattggataagatctgaggggcacactggtgtcatcagatgccttcagacggacagctggagaatagtgagtgctggagatgacaagacactaaagatgtggagtttagaaagtgggcagcgtctgctgactctacgctgtcacacagatggcgtgacatgtctacaattcaatgactacagcatagtctcaggatcttatgacaaaactgtgaagttgtgggactttactccttcccatgaatttttgactcctggctaa

Transcript

evm.model.Ap10.80

ATGAACGCGAATGTAAACAACCTATTTTTGGAGGTACAAGAACCGTCAACAAGCTGCTCCCAGAAAAGACCCTCGAAATCTCGTTCTCGAGTTTGGGAAAAGGTTGTTTGGTTTACGAGAAAGGCAAAAGGAGTCAAAGATAATAAAAACACCTCCCCTGAGGTGCAACAGAGCAATAATAATACTAATGTGGACTGTGCTGTCAGTAACTGCAAAACACTTGGAGTAGAAAAATCCGACAACAAGCAAAAAGTACGCAAGACACGAAGCTTCAAGTATCTGAAACGACGAAAAGTAAGGCAGTTTGGACATGAACTGAGCTCAGAAGCAGTCGAAGAAGAAGTCAATGTGCAGGACTGCGGTACAGCAACCGGAACCTTTCATGATTTTCAGTCCAAACGACGAATATCCCGGCACGAAAGAACAACAAGTAATAACAGTCTGCTTAGTGAGATAGCGAGGGGAATGAACTCTTCACAACAAAAAGTCCCGGAAAATGTTAAAAGCGCCTTATCTCTACCGCTAGACGACTTGTCATTAAGCGAGGGCCCAATTTCTGATAGTTTATCTCCGAATTTTCCACGAGTGAGGCGAAGTGTTAGTTTTTCCGGGCCGGCTTACAACAGCTGGCCAAGGAAGAAGCGAACATACTTGAGAAATTCCGGTTCCCGATTTGAGCTCCTATCACCCCCTATGAAGCAAAAATGCGTGTCTGGGATAAGGAAGAGAGCATCATTTAGTGGATTTGATTCATCTAAGATAAATTTGAAGAATTCTTATTTATCTCTGTATAAGGGGGTCAAAAGTACCCCTCATTTACCCCAGGGAGGTCACATCAGAAACCAGAATGGTCTAACTATCGGTGCTATTCATTTCTACAAAAGCCCAGCTATTTATCAAAAGGACGAGACAACTCTTAAACTCTTTCAGAGAAAGAGTCAGACAAGACAAGCAGATGACGAGTCAGATGTCTACGGGTCAACAAATGGGTCAGAAATGGGAAAGGACAGAACGATAGATACTGTGTTACCAAGAGAATCAGACACGATTAGTTTTACAATTTCTGAAACAAATGAAAACAGTAATAATATAGCTAACTGTAGTATGTCGGGTGAACACAATTGCCAAAGTAACTCGACTTGCGAAGGACAGACCAGCAGCAATGATGTCACCAACAGTACAAATAACTGCCTTTCTTTCCACATCAAAAGCAGCGACATGCAAAATTCTACCATCTCTGCTTTTTTGTTAGAGGGAGAATGCTCTAGTAGCTGCTGTATGACAACTAGTCCAGTTGATTCTTCTGACGAGGATTCTGTCAAGGAAAAGCCGTTGGTGTCAGCCGAGAAAGGGACACCTGTCAATTCTACTGATGAAAGCATTCTCACAAGAGATAATGGTATTAATTACACAGTTTTAGAATCAAACATTCATGAAAATGGGCCCATAAGAAGACTTAGCAATGGGTCTGATGAAGCTATGGACATCCCTGAGTATTATGCCGAAACCTCTGAGTTTGAAACTAAGGGAAATGTATCATGTTCACCACAGATTCACCAGGACAACACACTCCCTGTCACTGTGTCTGATGTAATTTCAGCTCATAACAAAGAAAACACTGACATTTTAAATGCAACTCAACATGACACATGCAGAACTGTGGCTCTTAGCTCTCTACCGACAGTTGACGAAGTCCGTAAAGTTGACATGACTCCCACTATTTCTTGTTCCTATGGCAACCCACAAACTTTGCAGACAGGAAATAAAATGCTGTGGCAGAGAAAGCCGACAGTCAGTGGGGAACAGTTTAAAAAGTACACAGAGGATATTTTGCAGTGGTTTAGGGAATTTAATGATGAGCAGAAGAACATATTAATCAAACGTCTTTTGGAAGAATGTGAGTTACCCCAGATGCATATGCTGTCTGTTGCAATGGAACCCCTACTGCACAAGAGCTGTCCACCCAATTGCCAAGACATGTTATCTTGGTTGCCACACCATGTTGCTTTACATGTTCTGTCATTTCTTGATTCAGTGAGTTTGTGCCGCTGCAGTCAAGTCAATCGCACATGGAACAATTTAGCTAGCAGTCCTTTATTGTGGCAGAATCTGTGTGGACGGCCCAACTGGCAATTGTCAAGGATCGGAGAAGAGAAGGAAAAGAAGAAGTACACTATGAAAGACGGAACAGTGCAGTGGAAGAAGATGTTTGCATCAAGATTCCTTTTACATCAGAACTGGTTAAAAGGAAAATGTGATGTGCGGACATTTGAAGGTCACACACAAGGTATCTCATGTGTTCAGTTTGATGACACAAGGATTGCAAGCGGCTCATATGACAAGACAATACGAGTGTGGGATATTCAGAGTGGTGACTGCAATGCTGTGCTCACTCTAGCTGGTCACTCTGGGACAGTCCGATGTCTAAATCTGAATGGTAACCGACTCGTTAGTGGTTCTGTGGATAGATCCATCAAGGTGTGGGATTTGTCATTTGAATCATACTGGAGTGGTGCTTCATGTAAAGTCACCATGGTGGGTCACATGCACACAGTTCGCTGTCTCCAGGTTGATGACAAGAAGGTGGTGAGTGGATCTTACGATAAAACACTCAAAGTTTGGGATATCAAGACTGGAAATTGCCAGCTAACTCTCAGGGGTCACAACGCTGCTGTCCTGTGCGTTCAGTTTGATGAGAGGAAAATTGTCTCTGGATCATATGACAAGACCATTAAGGTGTGGAGTCTGACAGAAGGTTCATGTCTAATGACACTAACAGGCCATCATGATGCTGTTACTTGTTTGAATTTAACATTTGACAGCAGGAAAGTCATTAGTGGCTCTCTGGACCATAATCTGAAATTTTGGGATCTGCTGAATGGAAAGTGTATTGGTACATTAGATTGGATAAGATCTGAGGGGCACACTGGTGTCATCAGATGCCTTCAGACGGACAGCTGGAGAATAGTGAGTGCTGGAGATGACAAGACACTAAAGATGTGGAGTTTAGAAAGTGGGCAGCGTCTGCTGACTCTACGCTGTCACACAGATGGCGTGACATGTCTACAATTCAATGACTACAGCATAGTCTCAGGATCTTATGACAAAACTGTGAAGTTGTGGGACTTTACTCCTTCCCATGAATTTTTGACTCCTGGCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C5FP68	Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) OX=554155 GN=sconB PE=3 SV=1
D4AM37	Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=sconB PE=3 SV=1
D4D8P3	Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Trichophyton verrucosum (strain HKI 0517) OX=663202 GN=sconB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007818 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19849 all species →	PHOSPHOLIPASE A-2-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10260	FBXW7, SEL10; F-box and WD-40 domain protein 7	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.