Genomic Location: Ap10:8792121...8793506
NR annotation: XP_022792310.1, putative bifunctional amine oxidase DDB_G0291301 [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap10.817 |
| Transcript |
| evm.model.Ap10.817 |
| Protein |
| evm.model.Ap10.817 |
| UniProt accession | Description |
|---|---|
| Q54EW2 | Putative bifunctional amine oxidase DDB_G0291301 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0291301 PE=1 SV=1 |
| P40854 | Monomeric sarcosine oxidase OS=Streptomyces sp. (strain KB210-8SY) OX=72592 GN=soxA PE=1 SV=2 |
| Q827H4 | Monomeric sarcosine oxidase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=soxA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010878 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01266 all species → | DAO | FAD dependent oxidoreductase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036188 all species → | Homologous_superfamily | FAD/NAD(P)-binding domain superfamily | Interproscan |
| IPR006076 all species → | Domain | FAD dependent oxidoreductase | Interproscan |
| IPR045170 all species → | Family | MTOX family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10961 all species → | PEROXISOMAL SARCOSINE OXIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008115 all species → | Molecular Function | sarcosine oxidase activity | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0050660 all species → | Molecular Function | flavin adenine dinucleotide binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00306 | PIPOX; sarcosine oxidase / L-pipecolate oxidase | EC:1.5.3.1 EC:1.5.3.7 | Peroxisome | ko04146 | deepkoala |
Transcript abundance of evm.model.Ap10.817 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
