Genomic Location: Ap10:9024174...9085607
NR annotation: CAH3148881.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families
| CDS |
| evm.model.Ap10.842 |
| Transcript |
| evm.model.Ap10.842 |
| Protein |
| evm.model.Ap10.842 |
| UniProt accession | Description |
|---|---|
| Q90941 | Protein polybromo-1 OS=Gallus gallus OX=9031 GN=PBRM1 PE=1 SV=1 |
| Q86U86 | Protein polybromo-1 OS=Homo sapiens OX=9606 GN=PBRM1 PE=1 SV=1 |
| Q8BSQ9 | Protein polybromo-1 OS=Mus musculus OX=10090 GN=Pbrm1 PE=1 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002410 (this species only) |
| Transcription factor family | HMG · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00439 all species → | Bromodomain | Bromodomain | Domain | Interproscan |
| PF00505 all species → | HMG_box | HMG (high mobility group) box | Domain | Interproscan |
| PF01426 all species → | BAH | BAH domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037968 all species → | Domain | Protein polybromo-1, Bromodomain 5 | Interproscan |
| IPR013087 all species → | Domain | Zinc finger C2H2-type | Interproscan |
| IPR001025 all species → | Domain | Bromo adjacent homology (BAH) domain | Interproscan |
| IPR036910 all species → | Homologous_superfamily | High mobility group box domain superfamily | Interproscan |
| IPR037382 all species → | Family | Remodelling complex subunit Rsc/polybromo | Interproscan |
| IPR001487 all species → | Domain | Bromodomain | Interproscan |
| IPR043151 all species → | Homologous_superfamily | Bromo adjacent homology (BAH) domain superfamily | Interproscan |
| IPR009071 all species → | Domain | High mobility group box domain | Interproscan |
| IPR036427 all species → | Homologous_superfamily | Bromodomain-like superfamily | Interproscan |
| IPR018359 all species → | Conserved_site | Bromodomain, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR16062 all species → | SWI/SNF-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003682 all species → | Molecular Function | chromatin binding | Interproscan |
| GO:0006338 all species → | Biological Process | chromatin remodeling | Interproscan |
| GO:0006368 all species → | Biological Process | transcription elongation by RNA polymerase II | Interproscan |
| GO:0016586 all species → | Cellular Component | RSC-type complex | Interproscan |
| GO:0043044 all species → | Biological Process | chromatin remodeling | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11757 | PBRM1, PB1; protein polybromo-1 | - | Chromosome and associated proteins | ko03036 | deepkoala |
