Gene detail

Detailed information of evm.model.Ap10.900 in Astrangia poculata

Genomic Location: Ap10:9550739...9556191
NR annotation: XP_020617405.1, uncharacterized protein LOC110055361 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.900

atggcggcaaggaaacacacattgcaaggatacaactttcctttctgtggcgaggagaacgtttctcagtcgttttttgactacggcagcccttcaatgttaaacataggtttggacgaacaaggtaaaaagcttgttatagactccaaacagtctcatgactcgcaattacagcggctagctgcaaaaaacctgagtttgcccttcttggaacctaatcaacgttctttggcaattccagaggaaactctgtttgattatcaatcaagtggacgttcctttagagataagaaaacttctgaaaagtgtggtgtgcatgtggataacttttcagccgatcatcctgatataatgtactcaactatggcagaacttgtgcaggacgacatgaactgttatccatggataacttgcaatgtgctcaaatcaaaatttaattccttcttgccttggagaaaaaaagagactacgtgcaaattgtgcctcaagtttactaaagctatagctaaccagaacagtaatcctgctggagtagtcaaggatttagcaagcgccttaccagatgtctcccctgagttattgtataatcttttacaagaaagccatgctttggaaatacaacgactccactatgacactttcttggggaattgtttagcttgttatacttcagagacagaccgtcagggcctactgatgtatccaagtggtccagatttagatgttttgaacttttcacacatctcacagcccatggattttgaaggtgcagaattaagcaatttatcgcctttaaaaccaataatgtcaactcaacagtttgcagttcaaggcagaataagacagattgactttacttcatacagtcataacaacattattgttgggttaagatcacagtaccactgctcattctttcaaagtaatccatgtgcatctggagaagagggaaaactctccctaaaacctcttgagacattagcactcactaaacaggccatgtgcattgctgtaagtccatacattcctggagaagcagtcaccgtcacagaaacaggtgcagtgtacctttggtcaggtgaccactctctgaggaacatacatcaagctaaccatgtcgagcgtcaagattccccttggtaccagtgtgtctttgctgcaaatcctcgatgcattgcaatggcagatacaaaaggagttgacttgttggattttagaattgcaacattattccaaagattattcttctccatcccatcaagtcatgttgactcctttgaatgtatatctgccattcagcgtcatcccaaaaatagccatcactatgtaatagccacagatcagtcactcatgcttcttgatgatcgatttcttcatcaccctgtcctgaagtggagacatcataatgaagatcctattcagttcattgatgtcgcttgcaatgcagtccctgaatgtgatgacacagtcttggttatatctggctcaagtcatcgacagacacactgctttcagtattcagacagccaagtccaagcagatgcctcattcccctttatcgccaaacagcagtatttaccacctcagtcaacatcctttccatggaaggtgtcgtcctatgatgagtggtattacacaggactgagcagcgacctcacattctcaccagcgactgcttcacggctttcacaaccactgacaggtgtctgtaccatgacccacctctcccacccacacaagggtttcactgtgtttcaaatgtcatctgttggcgacttattttaccagccattttttgtgcaagattacaaagattcagaaggagagaatttcagccacaaagagagtggtacattgaagagtagtgaacttggccctgaagctaagattttatgtcaaaaatggatcagtattgctgatcggcacaaggatgaatttgtaaaaaatgctccatgccaagttgagtatgtagagagtgacaagaaatcgctttgtcaggatttgatatctttgcctgagcctcatccctgttgcaaattgtgcaatgataggcaaggtgagaaaatcacagagctagaccaagtaaagccagaatcaagcatttgcaagaggtgcggtgtggaaataagttacggttcaacccttgtaaagcatcagcaaagtcatggagttcttacaagaagcagtttgcgcattcagcatcctatgaaagatcttgggattcatccagacttgaagatggccactgatcctcttagtaaatgtctgtgggtgaattgggatagcaatgaaccaatacctgtgttcttatcaggcgacaaagaagcagaaaatcagcctgatattcagaagagaactgtaaaagacgacatgcctgtcatttcacaaaatgcaacatcttcattcatcagtaacagtgcagacaatgatgttcatgaaattgtacctcagaaaccaaatacaccatctaaatcacaagctgtggacaaatcaccaaaggtgaagactgaaagaaagcaaactcgtcatgttatgggtttttag

Transcript

evm.model.Ap10.900

ATGGCGGCAAGGAAACACACATTGCAAGGATACAACTTTCCTTTCTGTGGCGAGGAGAACGTTTCTCAGTCGTTTTTTGACTACGGCAGCCCTTCAATGTTAAACATAGGTTTGGACGAACAAGGTAAAAAGCTTGTTATAGACTCCAAACAGTCTCATGACTCGCAATTACAGCGGCTAGCTGCAAAAAACCTGAGTTTGCCCTTCTTGGAACCTAATCAACGTTCTTTGGCAATTCCAGAGGAAACTCTGTTTGATTATCAATCAAGTGGACGTTCCTTTAGAGATAAGAAAACTTCTGAAAAGTGTGGTGTGCATGTGGATAACTTTTCAGCCGATCATCCTGATATAATGTACTCAACTATGGCAGAACTTGTGCAGGACGACATGAACTGTTATCCATGGATAACTTGCAATGTGCTCAAATCAAAATTTAATTCCTTCTTGCCTTGGAGAAAAAAAGAGACTACGTGCAAATTGTGCCTCAAGTTTACTAAAGCTATAGCTAACCAGAACAGTAATCCTGCTGGAGTAGTCAAGGATTTAGCAAGCGCCTTACCAGATGTCTCCCCTGAGTTATTGTATAATCTTTTACAAGAAAGCCATGCTTTGGAAATACAACGACTCCACTATGACACTTTCTTGGGGAATTGTTTAGCTTGTTATACTTCAGAGACAGACCGTCAGGGCCTACTGATGTATCCAAGTGGTCCAGATTTAGATGTTTTGAACTTTTCACACATCTCACAGCCCATGGATTTTGAAGGTGCAGAATTAAGCAATTTATCGCCTTTAAAACCAATAATGTCAACTCAACAGTTTGCAGTTCAAGGCAGAATAAGACAGATTGACTTTACTTCATACAGTCATAACAACATTATTGTTGGGTTAAGATCACAGTACCACTGCTCATTCTTTCAAAGTAATCCATGTGCATCTGGAGAAGAGGGAAAACTCTCCCTAAAACCTCTTGAGACATTAGCACTCACTAAACAGGCCATGTGCATTGCTGTAAGTCCATACATTCCTGGAGAAGCAGTCACCGTCACAGAAACAGGTGCAGTGTACCTTTGGTCAGGTGACCACTCTCTGAGGAACATACATCAAGCTAACCATGTCGAGCGTCAAGATTCCCCTTGGTACCAGTGTGTCTTTGCTGCAAATCCTCGATGCATTGCAATGGCAGATACAAAAGGAGTTGACTTGTTGGATTTTAGAATTGCAACATTATTCCAAAGATTATTCTTCTCCATCCCATCAAGTCATGTTGACTCCTTTGAATGTATATCTGCCATTCAGCGTCATCCCAAAAATAGCCATCACTATGTAATAGCCACAGATCAGTCACTCATGCTTCTTGATGATCGATTTCTTCATCACCCTGTCCTGAAGTGGAGACATCATAATGAAGATCCTATTCAGTTCATTGATGTCGCTTGCAATGCAGTCCCTGAATGTGATGACACAGTCTTGGTTATATCTGGCTCAAGTCATCGACAGACACACTGCTTTCAGTATTCAGACAGCCAAGTCCAAGCAGATGCCTCATTCCCCTTTATCGCCAAACAGCAGTATTTACCACCTCAGTCAACATCCTTTCCATGGAAGGTGTCGTCCTATGATGAGTGGTATTACACAGGACTGAGCAGCGACCTCACATTCTCACCAGCGACTGCTTCACGGCTTTCACAACCACTGACAGGTGTCTGTACCATGACCCACCTCTCCCACCCACACAAGGGTTTCACTGTGTTTCAAATGTCATCTGTTGGCGACTTATTTTACCAGCCATTTTTTGTGCAAGATTACAAAGATTCAGAAGGAGAGAATTTCAGCCACAAAGAGAGTGGTACATTGAAGAGTAGTGAACTTGGCCCTGAAGCTAAGATTTTATGTCAAAAATGGATCAGTATTGCTGATCGGCACAAGGATGAATTTGTAAAAAATGCTCCATGCCAAGTTGAGTATGTAGAGAGTGACAAGAAATCGCTTTGTCAGGATTTGATATCTTTGCCTGAGCCTCATCCCTGTTGCAAATTGTGCAATGATAGGCAAGGTGAGAAAATCACAGAGCTAGACCAAGTAAAGCCAGAATCAAGCATTTGCAAGAGGTGCGGTGTGGAAATAAGTTACGGTTCAACCCTTGTAAAGCATCAGCAAAGTCATGGAGTTCTTACAAGAAGCAGTTTGCGCATTCAGCATCCTATGAAAGATCTTGGGATTCATCCAGACTTGAAGATGGCCACTGATCCTCTTAGTAAATGTCTGTGGGTGAATTGGGATAGCAATGAACCAATACCTGTGTTCTTATCAGGCGACAAAGAAGCAGAAAATCAGCCTGATATTCAGAAGAGAACTGTAAAAGACGACATGCCTGTCATTTCACAAAATGCAACATCTTCATTCATCAGTAACAGTGCAGACAATGATGTTCATGAAATTGTACCTCAGAAACCAAATACACCATCTAAATCACAAGCTGTGGACAAATCACCAAAGGTGAAGACTGAAAGAAAGCAAACTCGTCATGTTATGGGTTTTTAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005742 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20641 all species →	TAF1C_beta-prop	TAF1C, beta-propeller	Repeat	Interproscan
PF20642 all species →	TAF1C_HB	TAF1C, helical bundle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR049087 all species →	Domain	TAF1C, beta-propeller domain	Interproscan
IPR049090 all species →	Domain	TAF1C, helical bundle domain	Interproscan
IPR038801 all species →	Family	TATA box-binding protein-associated factor RNA polymerase I subunit C	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15319 all species →	TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001164 all species →	Molecular Function	RNA polymerase I core promoter sequence-specific DNA binding	Interproscan
GO:0001650 all species →	Cellular Component	fibrillar center	Interproscan
GO:0006360 all species →	Biological Process	transcription by RNA polymerase I	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap10.900.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.