Gene detail

Detailed information of evm.model.Ap10.966 in Astrangia poculata

Genomic Location: Ap10:10304570...10315613
NR annotation: XP_020614995.1, uncharacterized protein LOC110053143 isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap10.966

atgaaaagctttatcgttaacctctcgcaacgaattcagatacgatcacagtctggatgttcaagtggttataaagatagcacatactttcgtaacacatttccttacttcttttggctgctgagagatgtgacactatccattccaaaggagtataaggatgtcaaggactactttttgagaaaggtttttaatgaacaagattcgtcatcttcaggccataaaagcaaggatgtagttgacagcatcttaaactttttccctggttttgacgcgttcactttaccgcctccatcagttgatcccgaaatgatgcaatgcataaacaagaacaaacgacaactcaatcctgcgtttttgagagcccttgccacccttgtcagtacctacgttgcggctttgaacacacctggtgctgttcctaatgtacagagtgcttgggagacgttccttgagaaaaagtgctcagaggtaattgcagccgccatacagttgtatgaaagttcaatgacgtcccagctggatggtaaattgccatgtgacagtgaagagattcgacgagttcagcaaatagcggtggaacagagcatgaaagcatttcaagaaggaactgttcaaatatctgctgcaagtagtaaaaattatttggaagagctcacgaaacatatggaaaagggtttgaagcgatggcaagaagaaaaccgacaacttacaaaggaatgctgtcacagactactgaagaacctcaaaaaaaagcatctggattccattctcaagcgactgagaggaccacaaggatcttcagtcagcttcgatcaaatagaaaaaagcttccttgttattgaacgggactttcagaagcaagcgctaggagctaaggatgtttgtgctcaagagtttctcaagttccaaccggaactgcagttagaaatggagaaacacaaagctcacttaaagcagttgaaggattacgatgaaaaattggctcaagagttgagagacaaagctatcgtggagaaggaaaggcaacggatacaggaggaaaatgcacgtttgttagaagaacaacgcacaaaacagaaagagatggagcttttaaagaaaaagcaggaagacgacatgaaacatctgaaggaaaagtttcaaaaggacatgaaagaccaagaaaatcggatgcagaacattatgaaagcaaaagtagacgaactgcagagagacaaggatgccattgtcaaacaaaacaaagggatgaaggatgaaatccagcaaatacgccaagccgtgaacgaaaaaagtcatcaaataaaaaagatgaagatgtcctcagcctcaatgtacatggcggtggtcgcaattgactttggaaccacatacagtggctttgcgttttcgttcaatgaccagagcggtcacgaaggaatctacatgaacagggaatggagaaacaaagaaggacgcagcaccttaaaaactccaacatcaattcttcttcgtcctaataaggcgtttgattcttttggatatgaggctgatgacaaatatgcacagtttacgaatggaaatgataaggagtattattacttgaaacactttaaaatggaactgcacaaaacaaaggacttggatcgaaccactcagctgacagctgccaatgaaaaaagggtcgacgctatgattgcgttctcgctttcaatgaaatacttgaaagatgaagcggttaaaaccattcgtaaggtaactcaagatcaattttacagcgccacagattttcagtgggtgttaactgtgcctgcaatatggacagcagcggctaaacagttcatgagagaagctgcatacaaggccggaattgcttctccgggtaacatggaacagttgataatcgcgttagaacctgaagccggtgcaatcttctgcaaagagagaaagatgaaagactttgctggccaaacaggagatgctagagtgtcagatgttctgtttcgccctgggctaagatatgcgatgatggacattggaggtggaacactcgatgttacagcccatgagagccttgccgatggcacgatcaaagaaatttataaagtaactgggggtgcttacggtggaatctatgtggatgaaaagttcgtaagcttgcttgaaaatcttttcgggattcgagccataaaagatttccgcctcaggtatcctgccgagtggcttcagatgatgaatgattttgagatgaagaaaagaggaagacgagcttttgaagacaaagatacaaggattacacttccccccaagtttgttgaaacggtctcaggcacctctggtttggccggacgtcatgacgttgagatactcaataatcagtacctctgtttggggccggagacggtgaagcagatgttccagcctgtggtcagtggaatcgttagccatatggaaaacgtgctcaaacgcccggaacttaacagtgtaaactgtttgtttatggtcggtggttttgccgaatctgccatccttcaagaagccatcaaaacagcattcagctcaagatgtaaaatactcatccctaacgaccctagcattgcagttgtccaaggagcaaccatgtttggtcagaagacaactactgttagttcaagagtcatggccacaacatatggttttagtgttcaccaatactttgatgctaaggtacatcccccagaaaagaagattatcgttgagggtaccgctttgtgcaaagatgtatttgacgtcgttgtgaaagaaaatgatgttgtaaacgttggcgagataaagcgttttactcgggcgccatttcgtagtgattcaaaaagtggtttatttcgcttttttacttctactgacccaaatgttaagtacacaaccgatgcctcggtgggtctctccataggacaggtggaggtcgagtcacccgacacctcaaaagggaggaatcgcgatatcgagttatgcgtctttttcgggggaacggaaataaaagcgaccgcaatcgataagaccagcggaaatgctgcaactgtgtacctcgactttttgagtaaatcttaa

Transcript

evm.model.Ap10.966

ATGAAAAGCTTTATCGTTAACCTCTCGCAACGAATTCAGATACGATCACAGTCTGGATGTTCAAGTGGTTATAAAGATAGCACATACTTTCGTAACACATTTCCTTACTTCTTTTGGCTGCTGAGAGATGTGACACTATCCATTCCAAAGGAGTATAAGGATGTCAAGGACTACTTTTTGAGAAAGGTTTTTAATGAACAAGATTCGTCATCTTCAGGCCATAAAAGCAAGGATGTAGTTGACAGCATCTTAAACTTTTTCCCTGGTTTTGACGCGTTCACTTTACCGCCTCCATCAGTTGATCCCGAAATGATGCAATGCATAAACAAGAACAAACGACAACTCAATCCTGCGTTTTTGAGAGCCCTTGCCACCCTTGTCAGTACCTACGTTGCGGCTTTGAACACACCTGGTGCTGTTCCTAATGTACAGAGTGCTTGGGAGACGTTCCTTGAGAAAAAGTGCTCAGAGGTAATTGCAGCCGCCATACAGTTGTATGAAAGTTCAATGACGTCCCAGCTGGATGGTAAATTGCCATGTGACAGTGAAGAGATTCGACGAGTTCAGCAAATAGCGGTGGAACAGAGCATGAAAGCATTTCAAGAAGGAACTGTTCAAATATCTGCTGCAAGTAGTAAAAATTATTTGGAAGAGCTCACGAAACATATGGAAAAGGGTTTGAAGCGATGGCAAGAAGAAAACCGACAACTTACAAAGGAATGCTGTCACAGACTACTGAAGAACCTCAAAAAAAAGCATCTGGATTCCATTCTCAAGCGACTGAGAGGACCACAAGGATCTTCAGTCAGCTTCGATCAAATAGAAAAAAGCTTCCTTGTTATTGAACGGGACTTTCAGAAGCAAGCGCTAGGAGCTAAGGATGTTTGTGCTCAAGAGTTTCTCAAGTTCCAACCGGAACTGCAGTTAGAAATGGAGAAACACAAAGCTCACTTAAAGCAGTTGAAGGATTACGATGAAAAATTGGCTCAAGAGTTGAGAGACAAAGCTATCGTGGAGAAGGAAAGGCAACGGATACAGGAGGAAAATGCACGTTTGTTAGAAGAACAACGCACAAAACAGAAAGAGATGGAGCTTTTAAAGAAAAAGCAGGAAGACGACATGAAACATCTGAAGGAAAAGTTTCAAAAGGACATGAAAGACCAAGAAAATCGGATGCAGAACATTATGAAAGCAAAAGTAGACGAACTGCAGAGAGACAAGGATGCCATTGTCAAACAAAACAAAGGGATGAAGGATGAAATCCAGCAAATACGCCAAGCCGTGAACGAAAAAAGTCATCAAATAAAAAAGATGAAGATGTCCTCAGCCTCAATGTACATGGCGGTGGTCGCAATTGACTTTGGAACCACATACAGTGGCTTTGCGTTTTCGTTCAATGACCAGAGCGGTCACGAAGGAATCTACATGAACAGGGAATGGAGAAACAAAGAAGGACGCAGCACCTTAAAAACTCCAACATCAATTCTTCTTCGTCCTAATAAGGCGTTTGATTCTTTTGGATATGAGGCTGATGACAAATATGCACAGTTTACGAATGGAAATGATAAGGAGTATTATTACTTGAAACACTTTAAAATGGAACTGCACAAAACAAAGGACTTGGATCGAACCACTCAGCTGACAGCTGCCAATGAAAAAAGGGTCGACGCTATGATTGCGTTCTCGCTTTCAATGAAATACTTGAAAGATGAAGCGGTTAAAACCATTCGTAAGGTAACTCAAGATCAATTTTACAGCGCCACAGATTTTCAGTGGGTGTTAACTGTGCCTGCAATATGGACAGCAGCGGCTAAACAGTTCATGAGAGAAGCTGCATACAAGGCCGGAATTGCTTCTCCGGGTAACATGGAACAGTTGATAATCGCGTTAGAACCTGAAGCCGGTGCAATCTTCTGCAAAGAGAGAAAGATGAAAGACTTTGCTGGCCAAACAGGAGATGCTAGAGTGTCAGATGTTCTGTTTCGCCCTGGGCTAAGATATGCGATGATGGACATTGGAGGTGGAACACTCGATGTTACAGCCCATGAGAGCCTTGCCGATGGCACGATCAAAGAAATTTATAAAGTAACTGGGGGTGCTTACGGTGGAATCTATGTGGATGAAAAGTTCGTAAGCTTGCTTGAAAATCTTTTCGGGATTCGAGCCATAAAAGATTTCCGCCTCAGGTATCCTGCCGAGTGGCTTCAGATGATGAATGATTTTGAGATGAAGAAAAGAGGAAGACGAGCTTTTGAAGACAAAGATACAAGGATTACACTTCCCCCCAAGTTTGTTGAAACGGTCTCAGGCACCTCTGGTTTGGCCGGACGTCATGACGTTGAGATACTCAATAATCAGTACCTCTGTTTGGGGCCGGAGACGGTGAAGCAGATGTTCCAGCCTGTGGTCAGTGGAATCGTTAGCCATATGGAAAACGTGCTCAAACGCCCGGAACTTAACAGTGTAAACTGTTTGTTTATGGTCGGTGGTTTTGCCGAATCTGCCATCCTTCAAGAAGCCATCAAAACAGCATTCAGCTCAAGATGTAAAATACTCATCCCTAACGACCCTAGCATTGCAGTTGTCCAAGGAGCAACCATGTTTGGTCAGAAGACAACTACTGTTAGTTCAAGAGTCATGGCCACAACATATGGTTTTAGTGTTCACCAATACTTTGATGCTAAGGTACATCCCCCAGAAAAGAAGATTATCGTTGAGGGTACCGCTTTGTGCAAAGATGTATTTGACGTCGTTGTGAAAGAAAATGATGTTGTAAACGTTGGCGAGATAAAGCGTTTTACTCGGGCGCCATTTCGTAGTGATTCAAAAAGTGGTTTATTTCGCTTTTTTACTTCTACTGACCCAAATGTTAAGTACACAACCGATGCCTCGGTGGGTCTCTCCATAGGACAGGTGGAGGTCGAGTCACCCGACACCTCAAAAGGGAGGAATCGCGATATCGAGTTATGCGTCTTTTTCGGGGGAACGGAAATAAAAGCGACCGCAATCGATAAGACCAGCGGAAATGCTGCAACTGTGTACCTCGACTTTTTGAGTAAATCTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K0U4	Heat shock 70 kDa protein 12A OS=Mus musculus OX=10090 GN=Hspa12a PE=1 SV=1
O43301	Heat shock 70 kDa protein 12A OS=Homo sapiens OX=9606 GN=HSPA12A PE=1 SV=2
Q96MM6	Heat shock 70 kDa protein 12B OS=Homo sapiens OX=9606 GN=HSPA12B PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000530 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02841 all species →	GBP_C	Guanylate-binding protein, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR036543 all species →	Homologous_superfamily	Guanylate-binding protein, C-terminal domain superfamily	Interproscan
IPR003191 all species →	Domain	Guanylate-binding protein/Atlastin, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14187 all species →	ALPHA KINASE/ELONGATION FACTOR 2 KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap10.966.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.