Gene detail

Detailed information of evm.model.Ap11.1009 in Astrangia poculata

Genomic Location: Ap11:11109232...11112225
NR annotation: KAJ7392032.1, axis elongation [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.1009

atgatgatgacaatgattctagctgcaaattttgtaacagttgcagctattggccagacctgttgcagtagaccactgggtatccaccggttaaagatggcgcacggccttgtactgtctcaaactttggtttgtctgctactggtcatgggctcgacaggccacgacgacagtgaacatacagaagaaatcatgcattgccgcagcaaaacccgtccgtcgttttacgagacaagagaaggtaacgaagttattagtgaacatgtgtattgcgagattaaaagcgcacaaccacgagtaaaataccactttgacattgcttccgtgctgcaggcaagaaaaccaaatgaaactttgtcgtatttgacagtagatattaagtgctgctcgccgatagagctagattttactaatttacataccttgatcaacaaaaaagttttgtcaaatttggtgttcgctggagggtgcgtcgtttcggtgcaaaatcttgctgtttggtcaagcgcgaccgaattgcttagagtggggtttgcaggaggtatggatggtcataacccacaacttaaggatgctgaaactttggaaagggacataaaaacacagacagccatcgcattttatgacagttccactggagaaatattggacacgctttctagtgccaagaatatatggcccagaatggcagaaattacattgtcaaatctttcactcgagataactccagaagatttgcaaacgactatgccctcgttgcaagcactccatgtgcagtccaatagattgaaacacccaccggactttccctggtccaattctacattagagctacctcgtggattaagaaggagtagagcttttaacaatgatattatgaaccgtgaaggcattgatatcgatacaaacatttattgccgcattttgaaattagatgctaacaacatcgaggatttagcatcgcacgagtttaaaggatttctgcacaaactttctcttgcgagaaatggtttgagaaaggtggggcctacgtgttttagcaatttgaacggaattcaatcgattgatctcaccaataataagttggatgatttaccaccgctgctgtttcaagggttaagcacattgctggaaatccgacttggagaaaacaatatttcacttgttccaccggaaatatttaaaaacttaaaaaatgtcaagaagattactttagatcataacaacataaaaagtatctcaagtggattgttttacacattagacaaactaaagattttgcatttagagggcaacaaacttgaagaaatcgaagaaggcgttttctctaataactctgttttgcaggagatttaccttcaaaacaataatttcaccaacgtacccacggctatatttcgcttaaggaatatgtcgaagattgatttctcccacaatacgttgacttttcaagacctcctcaatgttgtcaaaagttttagtgaagaatcatttaccgggaacttttctttcaatgccgctgggcctaaactgctcaatttgtcaaataacaactttactagattggacattcaaggcttaagtgaagtaaacaaacagaagatttctcgctttctggagacatacgagatcgaattagcagggaatgatttaacctgcgattgtagtatattggccattaagcaaaagatagaaactctcttggaaaataattctgactggaaatcacggttcaaaacatggaaatgtgcctggccagaagaactgaagagcaaaaaacttctggaaattagcgagaatgatgtaattgcacaaacgaagccaaaaaattgccctcttggatgttcttgtttcgagcgatgtttggatcaaaccgtcgtcatcgattgcgagggaagaaatctcaccgaagtaccgagaatactgccacatggtcccctgattgagcttaacttaaaaaacaacaacatcagagaacttcaagtgcatcctttcttgaaaaacctgttcgccttgtatttaacaggaaacaagatccaacaattaagtgcaaaaacggtgacgaaattaaaaagggtcagaattctgcacgtggactcaaacaacttgacaagcataccgagaaacatcaagagtcttagtttcacaaatcttgccttgcatgataatgcatttaaatgcagctgcacattaaaatggatgaagaactggctacagagactcaatcataatgatcaagttgaacagatcgaaaacgttctttgtgagtcagcggacaacgccgaaggagtgaaagcaatctacactttgcccgacgagaagtttggttgtaatgcaacggcggaatatagcaaaactgtagccaataaaacaaccatcatactggaaaaaacttccacagtcattgctgttactcttggaggcctgttagccatgaatttaatcatttttattctgttgtacaagtaccgaagagtattaaaggccttcatgtacacccacttcaattggcaccagttcgaccgcatagatgactcggattcaagcaataagatatatgacgcgtttgtgtcgtacagcgaaaaggaacgtgggtgggtcgaaaatactctgcaagcacgtctggaaaatcgccagcctccttacaaactctgccttcatcaccgcgactttgaagtcggtgcacctattgtaaggaacatactgaacagcgtcgaacacagtaagcgcatgctcatggtgctatctcgaaacttcttacagagcgagtggtgcatgctggagtttcgtacggcacatcacaaagtgctggaagatcgacttaaactaataattattttgtttgatgacgtcaacatagccgagctggatgacgaaatgaagttgtacatgcgcactaacacttatctcagtgtaagcgacaagtggttttgggagaagttgattcgcacgatgccgcaaggcacggtcagaaacgagcgcggagttgcttga

Transcript

evm.model.Ap11.1009

ATGATGATGACAATGATTCTAGCTGCAAATTTTGTAACAGTTGCAGCTATTGGCCAGACCTGTTGCAGTAGACCACTGGGTATCCACCGGTTAAAGATGGCGCACGGCCTTGTACTGTCTCAAACTTTGGTTTGTCTGCTACTGGTCATGGGCTCGACAGGCCACGACGACAGTGAACATACAGAAGAAATCATGCATTGCCGCAGCAAAACCCGTCCGTCGTTTTACGAGACAAGAGAAGGTAACGAAGTTATTAGTGAACATGTGTATTGCGAGATTAAAAGCGCACAACCACGAGTAAAATACCACTTTGACATTGCTTCCGTGCTGCAGGCAAGAAAACCAAATGAAACTTTGTCGTATTTGACAGTAGATATTAAGTGCTGCTCGCCGATAGAGCTAGATTTTACTAATTTACATACCTTGATCAACAAAAAAGTTTTGTCAAATTTGGTGTTCGCTGGAGGGTGCGTCGTTTCGGTGCAAAATCTTGCTGTTTGGTCAAGCGCGACCGAATTGCTTAGAGTGGGGTTTGCAGGAGGTATGGATGGTCATAACCCACAACTTAAGGATGCTGAAACTTTGGAAAGGGACATAAAAACACAGACAGCCATCGCATTTTATGACAGTTCCACTGGAGAAATATTGGACACGCTTTCTAGTGCCAAGAATATATGGCCCAGAATGGCAGAAATTACATTGTCAAATCTTTCACTCGAGATAACTCCAGAAGATTTGCAAACGACTATGCCCTCGTTGCAAGCACTCCATGTGCAGTCCAATAGATTGAAACACCCACCGGACTTTCCCTGGTCCAATTCTACATTAGAGCTACCTCGTGGATTAAGAAGGAGTAGAGCTTTTAACAATGATATTATGAACCGTGAAGGCATTGATATCGATACAAACATTTATTGCCGCATTTTGAAATTAGATGCTAACAACATCGAGGATTTAGCATCGCACGAGTTTAAAGGATTTCTGCACAAACTTTCTCTTGCGAGAAATGGTTTGAGAAAGGTGGGGCCTACGTGTTTTAGCAATTTGAACGGAATTCAATCGATTGATCTCACCAATAATAAGTTGGATGATTTACCACCGCTGCTGTTTCAAGGGTTAAGCACATTGCTGGAAATCCGACTTGGAGAAAACAATATTTCACTTGTTCCACCGGAAATATTTAAAAACTTAAAAAATGTCAAGAAGATTACTTTAGATCATAACAACATAAAAAGTATCTCAAGTGGATTGTTTTACACATTAGACAAACTAAAGATTTTGCATTTAGAGGGCAACAAACTTGAAGAAATCGAAGAAGGCGTTTTCTCTAATAACTCTGTTTTGCAGGAGATTTACCTTCAAAACAATAATTTCACCAACGTACCCACGGCTATATTTCGCTTAAGGAATATGTCGAAGATTGATTTCTCCCACAATACGTTGACTTTTCAAGACCTCCTCAATGTTGTCAAAAGTTTTAGTGAAGAATCATTTACCGGGAACTTTTCTTTCAATGCCGCTGGGCCTAAACTGCTCAATTTGTCAAATAACAACTTTACTAGATTGGACATTCAAGGCTTAAGTGAAGTAAACAAACAGAAGATTTCTCGCTTTCTGGAGACATACGAGATCGAATTAGCAGGGAATGATTTAACCTGCGATTGTAGTATATTGGCCATTAAGCAAAAGATAGAAACTCTCTTGGAAAATAATTCTGACTGGAAATCACGGTTCAAAACATGGAAATGTGCCTGGCCAGAAGAACTGAAGAGCAAAAAACTTCTGGAAATTAGCGAGAATGATGTAATTGCACAAACGAAGCCAAAAAATTGCCCTCTTGGATGTTCTTGTTTCGAGCGATGTTTGGATCAAACCGTCGTCATCGATTGCGAGGGAAGAAATCTCACCGAAGTACCGAGAATACTGCCACATGGTCCCCTGATTGAGCTTAACTTAAAAAACAACAACATCAGAGAACTTCAAGTGCATCCTTTCTTGAAAAACCTGTTCGCCTTGTATTTAACAGGAAACAAGATCCAACAATTAAGTGCAAAAACGGTGACGAAATTAAAAAGGGTCAGAATTCTGCACGTGGACTCAAACAACTTGACAAGCATACCGAGAAACATCAAGAGTCTTAGTTTCACAAATCTTGCCTTGCATGATAATGCATTTAAATGCAGCTGCACATTAAAATGGATGAAGAACTGGCTACAGAGACTCAATCATAATGATCAAGTTGAACAGATCGAAAACGTTCTTTGTGAGTCAGCGGACAACGCCGAAGGAGTGAAAGCAATCTACACTTTGCCCGACGAGAAGTTTGGTTGTAATGCAACGGCGGAATATAGCAAAACTGTAGCCAATAAAACAACCATCATACTGGAAAAAACTTCCACAGTCATTGCTGTTACTCTTGGAGGCCTGTTAGCCATGAATTTAATCATTTTTATTCTGTTGTACAAGTACCGAAGAGTATTAAAGGCCTTCATGTACACCCACTTCAATTGGCACCAGTTCGACCGCATAGATGACTCGGATTCAAGCAATAAGATATATGACGCGTTTGTGTCGTACAGCGAAAAGGAACGTGGGTGGGTCGAAAATACTCTGCAAGCACGTCTGGAAAATCGCCAGCCTCCTTACAAACTCTGCCTTCATCACCGCGACTTTGAAGTCGGTGCACCTATTGTAAGGAACATACTGAACAGCGTCGAACACAGTAAGCGCATGCTCATGGTGCTATCTCGAAACTTCTTACAGAGCGAGTGGTGCATGCTGGAGTTTCGTACGGCACATCACAAAGTGCTGGAAGATCGACTTAAACTAATAATTATTTTGTTTGATGACGTCAACATAGCCGAGCTGGATGACGAAATGAAGTTGTACATGCGCACTAACACTTATCTCAGTGTAAGCGACAAGTGGTTTTGGGAGAAGTTGATTCGCACGATGCCGCAAGGCACGGTCAGAAACGAGCGCGGAGTTGCTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P08953	Protein toll OS=Drosophila melanogaster OX=7227 GN=Tl PE=1 SV=1
Q9V477	Toll-like receptor Tollo OS=Drosophila melanogaster OX=7227 GN=Tollo PE=1 SV=1
Q9DGB6	Toll-like receptor 2 type-2 OS=Gallus gallus OX=9031 GN=TLR2-2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002891 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01582 all species →	TIR	TIR domain	Family	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR000483 all species →	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR000372 all species →	Domain	Leucine-rich repeat N-terminal domain	Interproscan
IPR017241 all species →	Family	Toll-like receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24365 all species →	TOLL-LIKE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0002224 all species →	Biological Process	toll-like receptor signaling pathway	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006954 all species →	Biological Process	inflammatory response	Interproscan
GO:0006955 all species →	Biological Process	immune response	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap11.1009.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.