Genomic Location: Ap11:11344170...11353708
NR annotation: XP_020622576.1, thioredoxin-related transmembrane protein 1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap11.1028 |
| Transcript |
| evm.model.Ap11.1028 |
| Protein |
| evm.model.Ap11.1028 |
| UniProt accession | Description |
|---|---|
| Q0Z7W6 | Thioredoxin-related transmembrane protein 1 OS=Bos taurus OX=9913 GN=TMX1 PE=2 SV=1 |
| Q9H3N1 | Thioredoxin-related transmembrane protein 1 OS=Homo sapiens OX=9606 GN=TMX1 PE=1 SV=1 |
| Q8VBT0 | Thioredoxin-related transmembrane protein 1 OS=Mus musculus OX=10090 GN=Tmx1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007076 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00085 all species → | Thioredoxin | Thioredoxin | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017937 all species → | Conserved_site | Thioredoxin, conserved site | Interproscan |
| IPR036249 all species → | Homologous_superfamily | Thioredoxin-like superfamily | Interproscan |
| IPR013766 all species → | Domain | Thioredoxin domain | Interproscan |
| IPR052454 all species → | Family | Thioredoxin-related transmembrane domain-containing protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46107 all species → | DUMPY: SHORTER THAN WILD-TYPE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0012505 all species → | Cellular Component | endomembrane system | Interproscan |
| GO:0015036 all species → | Molecular Function | disulfide oxidoreductase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K26746 | TMX1_4; thioredoxin-related transmembrane protein 1/4 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of evm.model.Ap11.1028 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
