Gene detail

Detailed information of evm.model.Ap11.1033 in Astrangia poculata

Genomic Location: Ap11:11472222...11488402
NR annotation: XP_022809709.1, uncharacterized protein LOC111346698 isoform X1 [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.1033

atggaaagtgtgtttgtaagggttcccaaagacttaaaaggttatgtcatcggaaagggcggatgtaagaaaaatgaaataatgcagtggtctggagcaataatcaggtcactgagcagagaagaggaagggtttacagtcagtggtgatccagagcagattgcatacgctaccacgcttatattagacacagtggaggaggcaagaattaataagtgggaactagtagagattccagatgaatataaaggaagagttattggaaagtctggagctagactcgatgaaataagcaaacagacgggagtgagctttactcgcaaaggaggggaagtgtatataacgtatggtacagaacaacaaaggcagcatgcaagagtaaacatcggagatatagtggctacagctaggcttagaggcgtagaaaatgaatttttcaaagctcgttgctacatcgatggccgttatcttcctgagaactgtaaacttaaacttgagaaggtgccagaagaagaccacgtctcgcttcctggaccacttgcacagtttagactgaaaccagtcgaggaaaaaggaacaaaggactctaacagcaactggagtcatcccaactaccagccagatctcgagaatgaagctttggactcgctacgtaagattaagtacgaaatgaatacaacagagtatccaaaggccgacatgtggtgtcatttaggaacctccattgttcgaggacccgatgatgggagcgttcacgaggaaacgttgagcatcgatgaagcaacagaaaagttgcaatcggatgatggaggaaggcactggagagtgacatttagagagcgagtggatctccaagaggatatattcgaacgaaatggttaccaaaagacgtctgaggataatgcatacattgctagatatgacttgacttatctgacgccttgtttttatcgactaaggtgtaagatatgggttgcaaaggagagcgccaagaaaaagttggatgaagatcaaattccatttagtgatgttaagaacaaattggaggagatccactttgaagatgtaataacacagtcacgtagtcgagcatggttggttctaaaatctcgaaaatatctgcagtgcgacattttgtttcctggttgcttatttgattgcaggctcaccatacgtggaagaacagatcatgttctcaccacagacgatgttcctgaactagaagttagacgtcgtttgtcaacatatctgtctggaataactttggcagaggaggatggttttggactacgacttccggagagggaactaccagaaggattttacttgacccataagcgatgctgtaggcgaacgacgtactccgccaatccaggattctctattattctttcaaaggagaacacatggtcgcgcaatgttgaaggacaagaggagagcagagaatcgactgaccttcatctacactgtgaagactgcgaccaacttctcagtagtaacgactgggaaccggaaaccgttgctcgtaagctgccaagctttattgagttcgttatgaatgttcaatgcctcgttgttactgagatgaagaaaagcggatcgacacgaaccattcctccagagattcttgcgcgaggtgctttagctcgggaagtctataacaatgccctggctgaaggcaagacgtgtgtcaagagggtaccattgatggcgattggtcaagaccgatccgggaagaccagcttaaagaagtccttgaaagggatacgttttaaccccgaggaagacagcactgtgggtattgatgtggatcgttacgatttcgaagtgaccaccgagatgtgggtgacggggaagaaggatgaagaagcaaaatctgatacagctgccatttcatttgagcataatgcagcacgattggttgcggaaagattgaagaaagaagaaagtgctactgagagagtaactgttgatagtgcaagaagctttgattctgaaatcaccgatatgctaatggaaacgcatttgagtgagccaccagaagacctagccccgattgacacgccagacgatacagcacccaccgacttcacagatgagcctcatttacaagcagaaaaagaacctgatacaaacaaatttaatgaagaaaacgatgcttttattaccacaaaagttccagatttcgaagatatagctgacattactgaaaagttactccaacatgatgtgttagaagacggagatcacatatattcaattttctgggattttgcagggcagtcggtttactatgtgacacatccactctttctcacagcaagagccatctactttttggtttatgatctcagccaaaatccacatggtacagccaaaccattggtgaagcaaggagtgtacaagaaatttgaagacagcttcaacctgaaaaagaatgtggattatttagatttttggatgacttccgtggcttccctagccaggcaggatgaaagcaatgacgtaggaggtgaagcgttagtaaacaaatttccgtcagttttcttagtgtgcactcatgctgacaaacctcacgatggtcgtgatcctcgggaactagctgtcgagatatttggttctctgaaagacaagccatacggttcccagttgtctgatgtgttcgttgttgataacaccaaatcaggtagtgaattggaatgcggagaggtcacgcgcctgcgagaggcagtgcttgatgttgctaaggagctacctcacattaatgaagttatcccagtcaagtggttaagatatgagaaagctcttcaaatagccaagataggagggtacaagtgcatttctcttgcacaagcaagacatattgcatccgaagtgtgcaacattaacaaagatgatgagattctaacattgttaaactttttgcacgatctacgaattttgattcattttaatgacactccagagttagataatgtggtggtcttggatcctcaatggttgattgacgtgttcaagaacgtgattaccgtcaggccatatgacacgaaagagaaggggtttttgagcctatggtgcaagcttgagaaagaaggaattttggaggaaaagcttttggaacatgtgtgggatcctttgatttgccagagagcaccacttgaaagtcttattgcaattatggagaaatttagcttgctgtgtccttggccgtcgttggatgattcctgcaacaagcagtatctggtcccatcaatgttgaagtcacatccaccaaaagcgatcagtgatctagttgcatctgcacaaattccttccctttttcttaaatttgaaactggtcaggttcctgcgggcttgtttccccgacttgtgctagagttctttcaatggtgcaatatcaaatttccgcagcaggcagcagttccccaatttttcaacaattttgccagattttacatccttccggaagaaggccactccgtggtccttctctgccactctttgtcggtcgagattcttgttctaagggacagtgaagctcttgacacacctgatgcaaactcggctcgtgctgttcgtgatcaattagcttcgatgatcgatcgcatgcggaacaagttcttttgggtaaagaacgtgggatgtgaaatgaatttcttatgcccagtttgttgtcaagggcgtgcagtcaactattgccgaaatcacaatgaagaaggctgcaaacaagaagaatgtcttcacttcttcccagaatccaaactatgcaacgctaaacaggtccttcattgcaccaggtccgctacagcacaagataaccgagtcacggtcaaacactttgctccttggcttccaactgggcatgaaaagcggcaagtgtctaatgaacatgacgggagacttcaatcttgtgaggaagatgggtacctggatcattctcttgccttacctagctacgttctaagatctcttcagccacagtcacttgttcctaccacactaggaactgtttatccccaacaacaagcagacagtgacggggacgggaggctcattccttttacacaagatgggtacctggatcattctcttgccttacctagcaacgttctaggatctcaacattcggaagcgtcccttgccttacctcgcgacgttcttgggtctcttcaatcccactcttaccctcccaaagatgttgtggttcaactacttcagagtctacaggtggagcacacctcgctagaacagccaggacccgaaaccaagaaatggatccgttgtctagcaaggaatgcaaagtgtttaaacaggattgatgtggttgaacacttgaggcagattacacccgcggggaccacgggccctatattggaagaaaatatgagtgtggttgatatccctcaaaagcagagaactgatttagcagtgcatttgtgtgggggaaatgagtggaaaatcgtcgcggagagactgggctttgatcaagcatacatccgttgtttagaccatcgttttcctaacccatttgaaatagtactcagatgttgtcaatttagcgttggtaaactttacgatgttttggcggaatgtggttttcctgtactcgctgattttctgtag

Transcript

evm.model.Ap11.1033

ATGGAAAGTGTGTTTGTAAGGGTTCCCAAAGACTTAAAAGGTTATGTCATCGGAAAGGGCGGATGTAAGAAAAATGAAATAATGCAGTGGTCTGGAGCAATAATCAGGTCACTGAGCAGAGAAGAGGAAGGGTTTACAGTCAGTGGTGATCCAGAGCAGATTGCATACGCTACCACGCTTATATTAGACACAGTGGAGGAGGCAAGAATTAATAAGTGGGAACTAGTAGAGATTCCAGATGAATATAAAGGAAGAGTTATTGGAAAGTCTGGAGCTAGACTCGATGAAATAAGCAAACAGACGGGAGTGAGCTTTACTCGCAAAGGAGGGGAAGTGTATATAACGTATGGTACAGAACAACAAAGGCAGCATGCAAGAGTAAACATCGGAGATATAGTGGCTACAGCTAGGCTTAGAGGCGTAGAAAATGAATTTTTCAAAGCTCGTTGCTACATCGATGGCCGTTATCTTCCTGAGAACTGTAAACTTAAACTTGAGAAGGTGCCAGAAGAAGACCACGTCTCGCTTCCTGGACCACTTGCACAGTTTAGACTGAAACCAGTCGAGGAAAAAGGAACAAAGGACTCTAACAGCAACTGGAGTCATCCCAACTACCAGCCAGATCTCGAGAATGAAGCTTTGGACTCGCTACGTAAGATTAAGTACGAAATGAATACAACAGAGTATCCAAAGGCCGACATGTGGTGTCATTTAGGAACCTCCATTGTTCGAGGACCCGATGATGGGAGCGTTCACGAGGAAACGTTGAGCATCGATGAAGCAACAGAAAAGTTGCAATCGGATGATGGAGGAAGGCACTGGAGAGTGACATTTAGAGAGCGAGTGGATCTCCAAGAGGATATATTCGAACGAAATGGTTACCAAAAGACGTCTGAGGATAATGCATACATTGCTAGATATGACTTGACTTATCTGACGCCTTGTTTTTATCGACTAAGGTGTAAGATATGGGTTGCAAAGGAGAGCGCCAAGAAAAAGTTGGATGAAGATCAAATTCCATTTAGTGATGTTAAGAACAAATTGGAGGAGATCCACTTTGAAGATGTAATAACACAGTCACGTAGTCGAGCATGGTTGGTTCTAAAATCTCGAAAATATCTGCAGTGCGACATTTTGTTTCCTGGTTGCTTATTTGATTGCAGGCTCACCATACGTGGAAGAACAGATCATGTTCTCACCACAGACGATGTTCCTGAACTAGAAGTTAGACGTCGTTTGTCAACATATCTGTCTGGAATAACTTTGGCAGAGGAGGATGGTTTTGGACTACGACTTCCGGAGAGGGAACTACCAGAAGGATTTTACTTGACCCATAAGCGATGCTGTAGGCGAACGACGTACTCCGCCAATCCAGGATTCTCTATTATTCTTTCAAAGGAGAACACATGGTCGCGCAATGTTGAAGGACAAGAGGAGAGCAGAGAATCGACTGACCTTCATCTACACTGTGAAGACTGCGACCAACTTCTCAGTAGTAACGACTGGGAACCGGAAACCGTTGCTCGTAAGCTGCCAAGCTTTATTGAGTTCGTTATGAATGTTCAATGCCTCGTTGTTACTGAGATGAAGAAAAGCGGATCGACACGAACCATTCCTCCAGAGATTCTTGCGCGAGGTGCTTTAGCTCGGGAAGTCTATAACAATGCCCTGGCTGAAGGCAAGACGTGTGTCAAGAGGGTACCATTGATGGCGATTGGTCAAGACCGATCCGGGAAGACCAGCTTAAAGAAGTCCTTGAAAGGGATACGTTTTAACCCCGAGGAAGACAGCACTGTGGGTATTGATGTGGATCGTTACGATTTCGAAGTGACCACCGAGATGTGGGTGACGGGGAAGAAGGATGAAGAAGCAAAATCTGATACAGCTGCCATTTCATTTGAGCATAATGCAGCACGATTGGTTGCGGAAAGATTGAAGAAAGAAGAAAGTGCTACTGAGAGAGTAACTGTTGATAGTGCAAGAAGCTTTGATTCTGAAATCACCGATATGCTAATGGAAACGCATTTGAGTGAGCCACCAGAAGACCTAGCCCCGATTGACACGCCAGACGATACAGCACCCACCGACTTCACAGATGAGCCTCATTTACAAGCAGAAAAAGAACCTGATACAAACAAATTTAATGAAGAAAACGATGCTTTTATTACCACAAAAGTTCCAGATTTCGAAGATATAGCTGACATTACTGAAAAGTTACTCCAACATGATGTGTTAGAAGACGGAGATCACATATATTCAATTTTCTGGGATTTTGCAGGGCAGTCGGTTTACTATGTGACACATCCACTCTTTCTCACAGCAAGAGCCATCTACTTTTTGGTTTATGATCTCAGCCAAAATCCACATGGTACAGCCAAACCATTGGTGAAGCAAGGAGTGTACAAGAAATTTGAAGACAGCTTCAACCTGAAAAAGAATGTGGATTATTTAGATTTTTGGATGACTTCCGTGGCTTCCCTAGCCAGGCAGGATGAAAGCAATGACGTAGGAGGTGAAGCGTTAGTAAACAAATTTCCGTCAGTTTTCTTAGTGTGCACTCATGCTGACAAACCTCACGATGGTCGTGATCCTCGGGAACTAGCTGTCGAGATATTTGGTTCTCTGAAAGACAAGCCATACGGTTCCCAGTTGTCTGATGTGTTCGTTGTTGATAACACCAAATCAGGTAGTGAATTGGAATGCGGAGAGGTCACGCGCCTGCGAGAGGCAGTGCTTGATGTTGCTAAGGAGCTACCTCACATTAATGAAGTTATCCCAGTCAAGTGGTTAAGATATGAGAAAGCTCTTCAAATAGCCAAGATAGGAGGGTACAAGTGCATTTCTCTTGCACAAGCAAGACATATTGCATCCGAAGTGTGCAACATTAACAAAGATGATGAGATTCTAACATTGTTAAACTTTTTGCACGATCTACGAATTTTGATTCATTTTAATGACACTCCAGAGTTAGATAATGTGGTGGTCTTGGATCCTCAATGGTTGATTGACGTGTTCAAGAACGTGATTACCGTCAGGCCATATGACACGAAAGAGAAGGGGTTTTTGAGCCTATGGTGCAAGCTTGAGAAAGAAGGAATTTTGGAGGAAAAGCTTTTGGAACATGTGTGGGATCCTTTGATTTGCCAGAGAGCACCACTTGAAAGTCTTATTGCAATTATGGAGAAATTTAGCTTGCTGTGTCCTTGGCCGTCGTTGGATGATTCCTGCAACAAGCAGTATCTGGTCCCATCAATGTTGAAGTCACATCCACCAAAAGCGATCAGTGATCTAGTTGCATCTGCACAAATTCCTTCCCTTTTTCTTAAATTTGAAACTGGTCAGGTTCCTGCGGGCTTGTTTCCCCGACTTGTGCTAGAGTTCTTTCAATGGTGCAATATCAAATTTCCGCAGCAGGCAGCAGTTCCCCAATTTTTCAACAATTTTGCCAGATTTTACATCCTTCCGGAAGAAGGCCACTCCGTGGTCCTTCTCTGCCACTCTTTGTCGGTCGAGATTCTTGTTCTAAGGGACAGTGAAGCTCTTGACACACCTGATGCAAACTCGGCTCGTGCTGTTCGTGATCAATTAGCTTCGATGATCGATCGCATGCGGAACAAGTTCTTTTGGGTAAAGAACGTGGGATGTGAAATGAATTTCTTATGCCCAGTTTGTTGTCAAGGGCGTGCAGTCAACTATTGCCGAAATCACAATGAAGAAGGCTGCAAACAAGAAGAATGTCTTCACTTCTTCCCAGAATCCAAACTATGCAACGCTAAACAGGTCCTTCATTGCACCAGGTCCGCTACAGCACAAGATAACCGAGTCACGGTCAAACACTTTGCTCCTTGGCTTCCAACTGGGCATGAAAAGCGGCAAGTGTCTAATGAACATGACGGGAGACTTCAATCTTGTGAGGAAGATGGGTACCTGGATCATTCTCTTGCCTTACCTAGCTACGTTCTAAGATCTCTTCAGCCACAGTCACTTGTTCCTACCACACTAGGAACTGTTTATCCCCAACAACAAGCAGACAGTGACGGGGACGGGAGGCTCATTCCTTTTACACAAGATGGGTACCTGGATCATTCTCTTGCCTTACCTAGCAACGTTCTAGGATCTCAACATTCGGAAGCGTCCCTTGCCTTACCTCGCGACGTTCTTGGGTCTCTTCAATCCCACTCTTACCCTCCCAAAGATGTTGTGGTTCAACTACTTCAGAGTCTACAGGTGGAGCACACCTCGCTAGAACAGCCAGGACCCGAAACCAAGAAATGGATCCGTTGTCTAGCAAGGAATGCAAAGTGTTTAAACAGGATTGATGTGGTTGAACACTTGAGGCAGATTACACCCGCGGGGACCACGGGCCCTATATTGGAAGAAAATATGAGTGTGGTTGATATCCCTCAAAAGCAGAGAACTGATTTAGCAGTGCATTTGTGTGGGGGAAATGAGTGGAAAATCGTCGCGGAGAGACTGGGCTTTGATCAAGCATACATCCGTTGTTTAGACCATCGTTTTCCTAACCCATTTGAAATAGTACTCAGATGTTGTCAATTTAGCGTTGGTAAACTTTACGATGTTTTGGCGGAATGTGGTTTTCCTGTACTCGCTGATTTTCTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5S006	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Mus musculus OX=10090 GN=Lrrk2 PE=1 SV=2
Q5S007	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens OX=9606 GN=LRRK2 PE=1 SV=2
Q8SSS9	Probable serine/threonine-protein kinase qkgA OS=Dictyostelium discoideum OX=44689 GN=qkgA-1 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000151 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013 all species →	KH_1	KH domain	Domain	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47679 all species →	PROTEIN TORNADO 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap11.1033.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.