Genomic Location: Ap11:11883791...11892065
NR annotation: XP_020627692.1, roquin-1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap11.1066 |
| Transcript |
| evm.model.Ap11.1066 |
| Protein |
| evm.model.Ap11.1066 |
| UniProt accession | Description |
|---|---|
| Q5TC82 | Roquin-1 OS=Homo sapiens OX=9606 GN=RC3H1 PE=1 SV=1 |
| Q4VGL6 | Roquin-1 OS=Mus musculus OX=10090 GN=Rc3h1 PE=1 SV=1 |
| Q6NUC6 | Roquin-1 OS=Xenopus laevis OX=8355 GN=rc3h1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003558 (this species only) |
| Transcription factor family | zf-CCCH · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21206 all species → | Roquin_1_2-like_ROQ | Roquin 1/2-like, ROQ domain | Domain | Interproscan |
| PF18386 all species → | ROQ_II | Roquin II domain | Domain | Interproscan |
| PF00642 all species → | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR048575 all species → | Domain | Roquin 1/2-like, ROQ domain | Interproscan |
| IPR041523 all species → | Domain | Roquin II | Interproscan |
| IPR052249 all species → | Family | Roquin domain-containing protein | Interproscan |
| IPR000571 all species → | Domain | Zinc finger, CCCH-type | Interproscan |
| IPR036855 all species → | Homologous_superfamily | Zinc finger, CCCH-type superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13139 all species → | RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000209 all species → | Biological Process | protein polyubiquitination | Interproscan |
| GO:0000288 all species → | Biological Process | nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | Interproscan |
| GO:0003725 all species → | Molecular Function | double-stranded RNA binding | Interproscan |
| GO:0003729 all species → | Molecular Function | mRNA binding | Interproscan |
| GO:0006511 all species → | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0010494 all species → | Cellular Component | cytoplasmic stress granule | Interproscan |
| GO:0035613 all species → | Molecular Function | RNA stem-loop binding | Interproscan |
| GO:0061630 all species → | Molecular Function | ubiquitin protein ligase activity | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
evm.model.Ap11.1066.
