Gene detail

Detailed information of evm.model.Ap11.1075 in Astrangia poculata

Genomic Location: Ap11:12012901...12027322
NR annotation: XP_020605848.1, cartilage intermediate layer protein 1-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.1075

atgattcacttcgcaaggcccaacgacagatcttggttaaccaatcaacggcactttaaaagaaggcttcttatgtggggattccaacgaatggacagaaacaaaaatggcctggttgactacaacgaagctgtaagagggaggtggagcgtgcgtggtccaagagtgtgccagttggctttccttcaagagtgcgatgaggatcagagcaggagtctctcgctgaaggaatggcagaattgcttcaaaatcaattcaggtgacgatgaagcttttccttcagacgttctaccccacttgaaactttcaaagtatgaatctccaatagttcttttcaactccactttaacagataaacctcagtcaggggcggatccaggatttttcttcggaggagaatgcaataaaacctgtctccgtggtcaacttgacaaagctctttgtcagtgccagtgtcctgaaagtgtcattcaaggacgggtagtgacgtcatcaggagctccacttcaaaacgtcagcattttgttcggactctcctctcctacagaaatggcaaggaccaataagagtggacacttttcactgattgacaggtgtgaaaattcgtcttatacgctgagaaagaacgactacgttcctcttcgacttgagggcggcattcaaagagatgaccatccacttttgatccgtcttgaagatgcagagccagcttacatcgccgtaaatcctaagagcaagacgcgcattgctggacaaagtgcgaatttcacctgtgaagcggaagggacgccaccaattaaaataagctggtattataatggaagacgtttacagaaggttaccatgggaacgagatctaacttgtttatcccaaacgtaaatggagctcaaggcttctatacttgcaaggccacaaacgattacggatcagagatttcgagtcctgccgagttaaagatccaggaggaaatattagatacctgcaaccgaacaccaagaagtcacatcataaaactaccaccaggatgtaaggtagcaagtacaggcgaggatacgctggatattggacaatgttctgacgaaccatgttcccagagttcatcattatcacaaagttgtggagctgaagaagattgttgctgcggcccagtgagcgaggatcaccaagagaggattgtcgttaactgcggtgtaagttacaatgacatggcgttttatcggctcaaagaatgcgggtgcggcacatgcaccaaaagagaaaccgtcataaaaggagaagtcgtccgtggccctgatcgagtcccagtcaagaacgtaaaaattatattcagaaagaaagtagttgataggacaaacgaagagggcaaattttcgttcactatttctgatgatgtggaccgtgtggttgtcacatttcatgacccgacagatcagttctttaatactactcaaaccgtgccaattctgaagggccagactgtgtcccacatcagcatagccctacctgaggaggacccgccagtgacgttcgacagcagccaagacctgagagtgccactggggcacactggggacagtatggcggagctagaattgccagcggacaatctgctgcataaagatgggaagccgttcaaaggtaaggcaaagctaagggtgagctggaaagatgcaagaaacgtcagtgacttattgactacaccaggagactttaccacagttgaccaatcaggagacgttcagccactgaaaacatacgggatacttagaatcaaagttcaggaccagagtaatgagctacttgaccttgcaggaaatatgaagatttttcttgaccctgataaggtaacgttgccaagtaatgcaactggagaaatggcgccatggctgtggtggctggatgaaaataccggaagatggcgccaaatgggagaaatgaaaccagtaaataactcaagaaccaaacgctcattgggtggccggaggttttacatcggtgacattcaaactgataaaatatcatacatcaacatcgacattctatggaagcgctgttatgttcgagcacaggcctacaccatgactaataaaggcacgcaacctgtcatgggggctgtggtgacattgattggcaaggagaataccaatcaggaacagtattatggatataccaagggaattactaataaaaatggaatagcttgtattcctgcatggtgcgactctaatgttgttttgcagtcaaccaagttgtcctataatgcagatgggagtaagcgtgtcagtcagttgaatcccaatgaaacagttttggagaagcttgcgcttgaattagaagcatctgttatagaagggaatgaatcgcgttcttttaagttcacgacaaaagtaacttcacaggcagggcccatattcggtggtgatgagatgaacaaatgtcttgatctcagtgacagtttgctggcgtttaggtttcgcttgaacgaagctgaagtcaaactgaacgagctagacgactttggttccaggccacccggacacccactgtcatggtacacaactgatgccagcaaaccaaaccaggaacccaagaagtgtttcattaaaattaaaacggaatatctccaacaagatgcggtcccttgggtatcagtgcaaagttttacccccgaccgtcaaaccaggtacggattttctttaaaagaacaaacactgacaggagaacgacccaccgttggatgggatgtggatctggtggctgctgcttgtgttgaatacagatgcagcgaaaaagacaaagagacattccttgtggtcactatgctcactaccgcatattgtttgtatgcagagccaattccagcaattcctgagtttcagccggaaaagtatggaaattttaccattgcaatgtctcccagaagtgcaagcttctatgccccagttgagatatctgacggcaaactgggattctattcaggccctggaaagatcgcagaagagcgttgcaaggccgggacagtacatgatgtagcagaaggtgtcaagaaaataaatagcgatggccatggagtgcgagccattgatgcagttgaatgcgcttggcctgattggatagaagaacgtaacagtggcccgaactga

Transcript

evm.model.Ap11.1075

ATGATTCACTTCGCAAGGCCCAACGACAGATCTTGGTTAACCAATCAACGGCACTTTAAAAGAAGGCTTCTTATGTGGGGATTCCAACGAATGGACAGAAACAAAAATGGCCTGGTTGACTACAACGAAGCTGTAAGAGGGAGGTGGAGCGTGCGTGGTCCAAGAGTGTGCCAGTTGGCTTTCCTTCAAGAGTGCGATGAGGATCAGAGCAGGAGTCTCTCGCTGAAGGAATGGCAGAATTGCTTCAAAATCAATTCAGGTGACGATGAAGCTTTTCCTTCAGACGTTCTACCCCACTTGAAACTTTCAAAGTATGAATCTCCAATAGTTCTTTTCAACTCCACTTTAACAGATAAACCTCAGTCAGGGGCGGATCCAGGATTTTTCTTCGGAGGAGAATGCAATAAAACCTGTCTCCGTGGTCAACTTGACAAAGCTCTTTGTCAGTGCCAGTGTCCTGAAAGTGTCATTCAAGGACGGGTAGTGACGTCATCAGGAGCTCCACTTCAAAACGTCAGCATTTTGTTCGGACTCTCCTCTCCTACAGAAATGGCAAGGACCAATAAGAGTGGACACTTTTCACTGATTGACAGGTGTGAAAATTCGTCTTATACGCTGAGAAAGAACGACTACGTTCCTCTTCGACTTGAGGGCGGCATTCAAAGAGATGACCATCCACTTTTGATCCGTCTTGAAGATGCAGAGCCAGCTTACATCGCCGTAAATCCTAAGAGCAAGACGCGCATTGCTGGACAAAGTGCGAATTTCACCTGTGAAGCGGAAGGGACGCCACCAATTAAAATAAGCTGGTATTATAATGGAAGACGTTTACAGAAGGTTACCATGGGAACGAGATCTAACTTGTTTATCCCAAACGTAAATGGAGCTCAAGGCTTCTATACTTGCAAGGCCACAAACGATTACGGATCAGAGATTTCGAGTCCTGCCGAGTTAAAGATCCAGGAGGAAATATTAGATACCTGCAACCGAACACCAAGAAGTCACATCATAAAACTACCACCAGGATGTAAGGTAGCAAGTACAGGCGAGGATACGCTGGATATTGGACAATGTTCTGACGAACCATGTTCCCAGAGTTCATCATTATCACAAAGTTGTGGAGCTGAAGAAGATTGTTGCTGCGGCCCAGTGAGCGAGGATCACCAAGAGAGGATTGTCGTTAACTGCGGTGTAAGTTACAATGACATGGCGTTTTATCGGCTCAAAGAATGCGGGTGCGGCACATGCACCAAAAGAGAAACCGTCATAAAAGGAGAAGTCGTCCGTGGCCCTGATCGAGTCCCAGTCAAGAACGTAAAAATTATATTCAGAAAGAAAGTAGTTGATAGGACAAACGAAGAGGGCAAATTTTCGTTCACTATTTCTGATGATGTGGACCGTGTGGTTGTCACATTTCATGACCCGACAGATCAGTTCTTTAATACTACTCAAACCGTGCCAATTCTGAAGGGCCAGACTGTGTCCCACATCAGCATAGCCCTACCTGAGGAGGACCCGCCAGTGACGTTCGACAGCAGCCAAGACCTGAGAGTGCCACTGGGGCACACTGGGGACAGTATGGCGGAGCTAGAATTGCCAGCGGACAATCTGCTGCATAAAGATGGGAAGCCGTTCAAAGGTAAGGCAAAGCTAAGGGTGAGCTGGAAAGATGCAAGAAACGTCAGTGACTTATTGACTACACCAGGAGACTTTACCACAGTTGACCAATCAGGAGACGTTCAGCCACTGAAAACATACGGGATACTTAGAATCAAAGTTCAGGACCAGAGTAATGAGCTACTTGACCTTGCAGGAAATATGAAGATTTTTCTTGACCCTGATAAGGTAACGTTGCCAAGTAATGCAACTGGAGAAATGGCGCCATGGCTGTGGTGGCTGGATGAAAATACCGGAAGATGGCGCCAAATGGGAGAAATGAAACCAGTAAATAACTCAAGAACCAAACGCTCATTGGGTGGCCGGAGGTTTTACATCGGTGACATTCAAACTGATAAAATATCATACATCAACATCGACATTCTATGGAAGCGCTGTTATGTTCGAGCACAGGCCTACACCATGACTAATAAAGGCACGCAACCTGTCATGGGGGCTGTGGTGACATTGATTGGCAAGGAGAATACCAATCAGGAACAGTATTATGGATATACCAAGGGAATTACTAATAAAAATGGAATAGCTTGTATTCCTGCATGGTGCGACTCTAATGTTGTTTTGCAGTCAACCAAGTTGTCCTATAATGCAGATGGGAGTAAGCGTGTCAGTCAGTTGAATCCCAATGAAACAGTTTTGGAGAAGCTTGCGCTTGAATTAGAAGCATCTGTTATAGAAGGGAATGAATCGCGTTCTTTTAAGTTCACGACAAAAGTAACTTCACAGGCAGGGCCCATATTCGGTGGTGATGAGATGAACAAATGTCTTGATCTCAGTGACAGTTTGCTGGCGTTTAGGTTTCGCTTGAACGAAGCTGAAGTCAAACTGAACGAGCTAGACGACTTTGGTTCCAGGCCACCCGGACACCCACTGTCATGGTACACAACTGATGCCAGCAAACCAAACCAGGAACCCAAGAAGTGTTTCATTAAAATTAAAACGGAATATCTCCAACAAGATGCGGTCCCTTGGGTATCAGTGCAAAGTTTTACCCCCGACCGTCAAACCAGGTACGGATTTTCTTTAAAAGAACAAACACTGACAGGAGAACGACCCACCGTTGGATGGGATGTGGATCTGGTGGCTGCTGCTTGTGTTGAATACAGATGCAGCGAAAAAGACAAAGAGACATTCCTTGTGGTCACTATGCTCACTACCGCATATTGTTTGTATGCAGAGCCAATTCCAGCAATTCCTGAGTTTCAGCCGGAAAAGTATGGAAATTTTACCATTGCAATGTCTCCCAGAAGTGCAAGCTTCTATGCCCCAGTTGAGATATCTGACGGCAAACTGGGATTCTATTCAGGCCCTGGAAAGATCGCAGAAGAGCGTTGCAAGGCCGGGACAGTACATGATGTAGCAGAAGGTGTCAAGAAAATAAATAGCGATGGCCATGGAGTGCGAGCCATTGATGCAGTTGAATGCGCTTGGCCTGATTGGATAGAAGAACGTAACAGTGGCCCGAACTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001374 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10591 all species →	SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR019577 all species →	Domain	SPARC/Testican, calcium-binding domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR039675 all species →	Family	Cartilage intermediate layer protein 1/2	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15031 all species →	CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24436	CILP; cartilage intermediate layer protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.