Gene detail

Detailed information of evm.model.Ap11.1088 in Astrangia poculata

Genomic Location: Ap11:12167781...12185185
NR annotation: XP_020605847.1, cartilage intermediate layer protein 1-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.1088

atgagagaagcaggagaggcgattctgggattcagaagaaggaagaaagaagaatggatacagcaaggaacatgggaaaagatcaatgaaaggaaacagatgaaggagaagataaattcaacaagatcagagagtgtgaaggaccgctgcagaaagaaataccaagaactggataaggaggtgaaaaggatggccaagagggacaagaaggacaacgtcgagaacctggctgaggaagcagaagaggctgcagcacagcaagacctgaaaaccagtggaaacaggcccgctaaggataagaatggcacggttctatctcgagtagatgaaaacttgaaaagatggcaagagcatttccacagtatcctcaatcgaccagaccctgaaaacacaacctcaatacccgaagccactcaagacgttgacatcaacactgacaccccctcaatccaagaaatcaagaaggccatcaaggagatgaaaaacggcaaagcgcctggagcagacggaatctgtgctgaactgctaaaagcggaagaaactctgatatctaccattcttcagaagatcttccaagaaatctggatttccgagaacatgcctgaagattggaagactggcttgatcgtaaggcttgccaaaaaaggagacttatctgattgtaacaactggaggggtgtaacactcctgagtctcacaagcaaagtgttcagcaagatcatactagggcgcatgactgccgccctggagaaggacattcgtaaagagcaagctggcttccgtaaagggagatcctgcagtgaccacatcttcactctcaggaagatctttgagcaggcgaaggaatggaacagcacagtctatgcgaatttaatagactttgaaaaagccttcgatagcatccacagggaaacgctatggtgcatccttcgacactacggaataccatccaaggtagtgaatatcatcagaatgctgtatcacgactgccgcgcccaggtcatctgtgaaaaccagactaaactccgcttcttcaagagtaacgttctcaccacgttgctgtatgggtgcgagtcatggaaggccacaaaagccatttgccacaaacttgccacattccaaattcggtgtctacgccgcattctgaacatcttctggcctaacatcatttcaaacgccgagctacgccgggcaacctcaacgaacaacatcagctccgaggtgaagaagagaaggtggcgctggatcggacacgtcctcaggatggatctatcatcaattcccagagttgctctgcactggactccatctgggaaaagagcaaggggacgaccaaaagagacctggcggcggacagttgaaaaagagatgcgggaaagcggactcagctgggggagagctgagaaagactgcaaagaacaggcagcagtggcggaatctggtaacggccttatgtgcccaagagcacgaagaggattgagtgtagttcagtatctgcactgcactacagagcttacattgtatcgaaggactgatatagacatcgaacgttactccgtttctgtacaaagaacgtttgccactgatatcgtgtatgaactttacccggaactttatcgcaaagtagcatctggatgcccaagtgaccagttgtccaaattctccctcaaatatgctaaagatcttcaaaagcgtgttctaaatatgattcactttgcaaggcccgatgacagatcttggttaacagaacaacagcactttaaaagaaggcttcttatgtggggattccaacgaatggacagaaacaaaaatggtctggttgactacaacgaagctgcaagagggaggtggagcctgcgtggtccaagagtgtgccagttagctttccttcgagagtgtgatgaagatcagagcaggagtctctcgctgaaggaatggcagaattgcttcaaaatcaattcagaatgcaataaaacctgtctctgtggtcaacttgacacagatctttgtcagtgccagtgtcctgaaagtgtcattcaaggacgggtagtgacgtcatttggagccccacttcaagaagtcagcattttgttcggactctcctctccttcagaaatggcaaggaccaataagagtggacacttttcaatgattgacaggtgtgaaaattcgtcttataccctgagaaagaacgactacattcctcttcgacttgagggcagtattcaaagagacggccatccgcttttgatccgtcttgaagatgcagagccagctttcatcgccgttaatccaaagagcaagacacgcattgctggacaaagtgcgaatttcacctgtgaagcagaagggaccctaccaattgaaataagctggtatcataatggaaggcgttcaaagaaggttaccatgggaacgaaatctaacttgtttatcccgaacgtaaatggagctcaaggcttctatacttgcaagtccacaaacgattacggatcagagatttcgagtcctgccgagttaaaggtccaagaggaaatattagatacctgcaaccgaacaccaagaagtcacgtcataaaactaccaccaggatgtaaggtagaaagcacaggcgaggacaccctggatattggacaatgttctgacgaaccatgctccatgcatgcatggagcatggttcgcatggagcatgtgagcgaggatcaccaagagaggatcgtcgtaaactgcggtgtaagttacaatgacatggtgttttatcggctcaaaggatgcggatgcggcacatgcgccaaaagagaaaccgtcataaaaggagaagtcgttcgtggccctgatcgagtcccagtcaagaacgtgaaagttatcttcagaaagaaagtagttgataggacaaacgaagagggcaaattttcgttcactatttctgatgatgtggaccgtgtggttgtcacatttcatgacccgacagatcagttctttaacactactcaaaccgtgccaattctgaagggccagactgtgtcccacatcagcatagccctacctgaggaggacccgccagtgacgttcgacagcagccaagacctgagagtgccactgggacacactggggacagcatggcggagctagaattgccagcggacaatctgctgcataaagatgggaagccgttcaaaggtaaagcaaagctaagggtgagttggaaagatgcaagaaacgtcagtgacttattgactacaccaggagacttcaccacagttgaccaatcaggagacgttcagccactgaaaacatacgggatacttagaatcaaagttcaggacgaggataatgagcaacttgaccttgcaggaaatatgaagatttatcttgaccctgataagattatgttgccaagtaatgttactggagaaatggcgccatggctgtggtggctggatgaaaataccggaagatggcgccaaatgggagaaatgaaaccagtcaataactcaagaaccaaacgctcattgggtggcaggaggttttacatcggtgacattcaaactgataaactatcatacatcaacatcgacattctatggaagcgctgttatgttcgagcacaggcctacaccatgactaataaaggcacgcaacctgtcatgggggttgtagtgacattgattggcaaagagaataccaatcagaaacagtattatggatataccaagggaattacaaataaaaacggaatagcttgtattcctgcatggtgcgactctaatgttgttttacagtcgaccaaggtgtcctataatgcagatgggagtgaacgtgtcagtaagttaaatctcgatgatacaattttggagaagcttgctcctgaattagaagcatctgttatagaagggaatgaatcgcgttcttttcagttcacgacgaaagtaacttcacaggcagggcccatattcggtggtgatgagatgaacaaatgtcttgatctcagtgacagtttgctggcgtttagttttcgcttggacgaggctgaagtcaaactgaacgagctcgacgactttggttccaggccacccggtcacccactgtcatggtatacgactgatgccagcaaaccaaaccaggaacctaagaagtgtttccttaaaattaaaacagaatatcgctcacaagattcagttccttgggtatcagtgcaaagtttcacacccgatcgtcaaaccaggtacggattttcttcaaaagaacaatccctgacaaaagaacgacccactaacgaatggtatgtggatcgggtggcttctgcttgtgttgaatacagatgcagcgaaaaagacaaagagacattccttgtggtcactatgcttactaccgcctcctgtttttacgatgtaccaattacagcaattctcgagtttcagccaaattttaccattgcgatatcttccagaagtgcagggttctatgccccagttgagatatctgacggtaaactgggattctattcaggccctggaaagatcgcagaagagcgttgcaaggccgggacagtagacgatgtaggagaaggtgtcaagaaaataaatagcgatggacatggattgctagcctttgatgcacctgaatgccctttgtacgaatggatggaattccgtaacagtggcccaaattga

Transcript

evm.model.Ap11.1088

ATGAGAGAAGCAGGAGAGGCGATTCTGGGATTCAGAAGAAGGAAGAAAGAAGAATGGATACAGCAAGGAACATGGGAAAAGATCAATGAAAGGAAACAGATGAAGGAGAAGATAAATTCAACAAGATCAGAGAGTGTGAAGGACCGCTGCAGAAAGAAATACCAAGAACTGGATAAGGAGGTGAAAAGGATGGCCAAGAGGGACAAGAAGGACAACGTCGAGAACCTGGCTGAGGAAGCAGAAGAGGCTGCAGCACAGCAAGACCTGAAAACCAGTGGAAACAGGCCCGCTAAGGATAAGAATGGCACGGTTCTATCTCGAGTAGATGAAAACTTGAAAAGATGGCAAGAGCATTTCCACAGTATCCTCAATCGACCAGACCCTGAAAACACAACCTCAATACCCGAAGCCACTCAAGACGTTGACATCAACACTGACACCCCCTCAATCCAAGAAATCAAGAAGGCCATCAAGGAGATGAAAAACGGCAAAGCGCCTGGAGCAGACGGAATCTGTGCTGAACTGCTAAAAGCGGAAGAAACTCTGATATCTACCATTCTTCAGAAGATCTTCCAAGAAATCTGGATTTCCGAGAACATGCCTGAAGATTGGAAGACTGGCTTGATCGTAAGGCTTGCCAAAAAAGGAGACTTATCTGATTGTAACAACTGGAGGGGTGTAACACTCCTGAGTCTCACAAGCAAAGTGTTCAGCAAGATCATACTAGGGCGCATGACTGCCGCCCTGGAGAAGGACATTCGTAAAGAGCAAGCTGGCTTCCGTAAAGGGAGATCCTGCAGTGACCACATCTTCACTCTCAGGAAGATCTTTGAGCAGGCGAAGGAATGGAACAGCACAGTCTATGCGAATTTAATAGACTTTGAAAAAGCCTTCGATAGCATCCACAGGGAAACGCTATGGTGCATCCTTCGACACTACGGAATACCATCCAAGGTAGTGAATATCATCAGAATGCTGTATCACGACTGCCGCGCCCAGGTCATCTGTGAAAACCAGACTAAACTCCGCTTCTTCAAGAGTAACGTTCTCACCACGTTGCTGTATGGGTGCGAGTCATGGAAGGCCACAAAAGCCATTTGCCACAAACTTGCCACATTCCAAATTCGGTGTCTACGCCGCATTCTGAACATCTTCTGGCCTAACATCATTTCAAACGCCGAGCTACGCCGGGCAACCTCAACGAACAACATCAGCTCCGAGGTGAAGAAGAGAAGGTGGCGCTGGATCGGACACGTCCTCAGGATGGATCTATCATCAATTCCCAGAGTTGCTCTGCACTGGACTCCATCTGGGAAAAGAGCAAGGGGACGACCAAAAGAGACCTGGCGGCGGACAGTTGAAAAAGAGATGCGGGAAAGCGGACTCAGCTGGGGGAGAGCTGAGAAAGACTGCAAAGAACAGGCAGCAGTGGCGGAATCTGGTAACGGCCTTATGTGCCCAAGAGCACGAAGAGGATTGAGTGTAGTTCAGTATCTGCACTGCACTACAGAGCTTACATTGTATCGAAGGACTGATATAGACATCGAACGTTACTCCGTTTCTGTACAAAGAACGTTTGCCACTGATATCGTGTATGAACTTTACCCGGAACTTTATCGCAAAGTAGCATCTGGATGCCCAAGTGACCAGTTGTCCAAATTCTCCCTCAAATATGCTAAAGATCTTCAAAAGCGTGTTCTAAATATGATTCACTTTGCAAGGCCCGATGACAGATCTTGGTTAACAGAACAACAGCACTTTAAAAGAAGGCTTCTTATGTGGGGATTCCAACGAATGGACAGAAACAAAAATGGTCTGGTTGACTACAACGAAGCTGCAAGAGGGAGGTGGAGCCTGCGTGGTCCAAGAGTGTGCCAGTTAGCTTTCCTTCGAGAGTGTGATGAAGATCAGAGCAGGAGTCTCTCGCTGAAGGAATGGCAGAATTGCTTCAAAATCAATTCAGAATGCAATAAAACCTGTCTCTGTGGTCAACTTGACACAGATCTTTGTCAGTGCCAGTGTCCTGAAAGTGTCATTCAAGGACGGGTAGTGACGTCATTTGGAGCCCCACTTCAAGAAGTCAGCATTTTGTTCGGACTCTCCTCTCCTTCAGAAATGGCAAGGACCAATAAGAGTGGACACTTTTCAATGATTGACAGGTGTGAAAATTCGTCTTATACCCTGAGAAAGAACGACTACATTCCTCTTCGACTTGAGGGCAGTATTCAAAGAGACGGCCATCCGCTTTTGATCCGTCTTGAAGATGCAGAGCCAGCTTTCATCGCCGTTAATCCAAAGAGCAAGACACGCATTGCTGGACAAAGTGCGAATTTCACCTGTGAAGCAGAAGGGACCCTACCAATTGAAATAAGCTGGTATCATAATGGAAGGCGTTCAAAGAAGGTTACCATGGGAACGAAATCTAACTTGTTTATCCCGAACGTAAATGGAGCTCAAGGCTTCTATACTTGCAAGTCCACAAACGATTACGGATCAGAGATTTCGAGTCCTGCCGAGTTAAAGGTCCAAGAGGAAATATTAGATACCTGCAACCGAACACCAAGAAGTCACGTCATAAAACTACCACCAGGATGTAAGGTAGAAAGCACAGGCGAGGACACCCTGGATATTGGACAATGTTCTGACGAACCATGCTCCATGCATGCATGGAGCATGGTTCGCATGGAGCATGTGAGCGAGGATCACCAAGAGAGGATCGTCGTAAACTGCGGTGTAAGTTACAATGACATGGTGTTTTATCGGCTCAAAGGATGCGGATGCGGCACATGCGCCAAAAGAGAAACCGTCATAAAAGGAGAAGTCGTTCGTGGCCCTGATCGAGTCCCAGTCAAGAACGTGAAAGTTATCTTCAGAAAGAAAGTAGTTGATAGGACAAACGAAGAGGGCAAATTTTCGTTCACTATTTCTGATGATGTGGACCGTGTGGTTGTCACATTTCATGACCCGACAGATCAGTTCTTTAACACTACTCAAACCGTGCCAATTCTGAAGGGCCAGACTGTGTCCCACATCAGCATAGCCCTACCTGAGGAGGACCCGCCAGTGACGTTCGACAGCAGCCAAGACCTGAGAGTGCCACTGGGACACACTGGGGACAGCATGGCGGAGCTAGAATTGCCAGCGGACAATCTGCTGCATAAAGATGGGAAGCCGTTCAAAGGTAAAGCAAAGCTAAGGGTGAGTTGGAAAGATGCAAGAAACGTCAGTGACTTATTGACTACACCAGGAGACTTCACCACAGTTGACCAATCAGGAGACGTTCAGCCACTGAAAACATACGGGATACTTAGAATCAAAGTTCAGGACGAGGATAATGAGCAACTTGACCTTGCAGGAAATATGAAGATTTATCTTGACCCTGATAAGATTATGTTGCCAAGTAATGTTACTGGAGAAATGGCGCCATGGCTGTGGTGGCTGGATGAAAATACCGGAAGATGGCGCCAAATGGGAGAAATGAAACCAGTCAATAACTCAAGAACCAAACGCTCATTGGGTGGCAGGAGGTTTTACATCGGTGACATTCAAACTGATAAACTATCATACATCAACATCGACATTCTATGGAAGCGCTGTTATGTTCGAGCACAGGCCTACACCATGACTAATAAAGGCACGCAACCTGTCATGGGGGTTGTAGTGACATTGATTGGCAAAGAGAATACCAATCAGAAACAGTATTATGGATATACCAAGGGAATTACAAATAAAAACGGAATAGCTTGTATTCCTGCATGGTGCGACTCTAATGTTGTTTTACAGTCGACCAAGGTGTCCTATAATGCAGATGGGAGTGAACGTGTCAGTAAGTTAAATCTCGATGATACAATTTTGGAGAAGCTTGCTCCTGAATTAGAAGCATCTGTTATAGAAGGGAATGAATCGCGTTCTTTTCAGTTCACGACGAAAGTAACTTCACAGGCAGGGCCCATATTCGGTGGTGATGAGATGAACAAATGTCTTGATCTCAGTGACAGTTTGCTGGCGTTTAGTTTTCGCTTGGACGAGGCTGAAGTCAAACTGAACGAGCTCGACGACTTTGGTTCCAGGCCACCCGGTCACCCACTGTCATGGTATACGACTGATGCCAGCAAACCAAACCAGGAACCTAAGAAGTGTTTCCTTAAAATTAAAACAGAATATCGCTCACAAGATTCAGTTCCTTGGGTATCAGTGCAAAGTTTCACACCCGATCGTCAAACCAGGTACGGATTTTCTTCAAAAGAACAATCCCTGACAAAAGAACGACCCACTAACGAATGGTATGTGGATCGGGTGGCTTCTGCTTGTGTTGAATACAGATGCAGCGAAAAAGACAAAGAGACATTCCTTGTGGTCACTATGCTTACTACCGCCTCCTGTTTTTACGATGTACCAATTACAGCAATTCTCGAGTTTCAGCCAAATTTTACCATTGCGATATCTTCCAGAAGTGCAGGGTTCTATGCCCCAGTTGAGATATCTGACGGTAAACTGGGATTCTATTCAGGCCCTGGAAAGATCGCAGAAGAGCGTTGCAAGGCCGGGACAGTAGACGATGTAGGAGAAGGTGTCAAGAAAATAAATAGCGATGGACATGGATTGCTAGCCTTTGATGCACCTGAATGCCCTTTGTACGAATGGATGGAATTCCGTAACAGTGGCCCAAATTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001374 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10591 all species →	SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR019577 all species →	Domain	SPARC/Testican, calcium-binding domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR039675 all species →	Family	Cartilage intermediate layer protein 1/2	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15031 all species →	CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap11.1088.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.