Gene detail

Detailed information of evm.model.Ap11.1095 in Astrangia poculata

Genomic Location: Ap11:12249841...12259354
NR annotation: XP_020607236.1, malignant fibrous histiocytoma-amplified sequence 1 homolog [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.1095

atggcaggtgaaattgaatttgaagtcatcaatgtgccgccaaaagagttgccagtcacaaacgagaatggtaccatcacagtggatctgacaggatatgatccattaaccccagatgaatttcccgatttctccagtgtgcacggacttcaggatcttagatttttttcaaactatctgaaagagattcctgatggcttctgtgaagccaatcagctacggaccctgatcatgagttgtagtcctatcaaaccagacaatggcctcttgcgtctaccaacacagtttaaccatttttcacaattggaagagctgcatctagtaggaaatcattttgagagcttccccatgcctatatgtgagctgaaaaatgtcaagaaactgtacatggacaactgcactctcacaaagattccaaaagaaattggaaatatgtcaagtcttgccgtagtagactttagttacaatagtctcggtgatcctgatagtttgccaaaagaattttttcatttaccaaatatcaaggatttgtacctgatagactgtcagctgaatgagttgcctactgaaattggagaattaaagaacttggaaggtctgagaataggaaagaataatctaaccagccttccagatgaattattcaatttggtgaacctcaggaagctaagtgctgaacgcaacaagatctcggagctatccccaaagattggccagctcagcgctttggtattcctcttaataatggagaacaggcttaccactctgcctgatgagataaagaatttagaaaactgcatgcatatcaacttgtttgataacaaacttacatgcctaccgcgatccattattgacatgccagtgcttgagtcactaatcgttgatggaaacaacaatctgcggaatccaccacttgatgtctgcacgcgtggtctggacagcatcagaggttattttgaatctctagcatccgttgacactcaagcggttcattcacagcgtctgaaagtggtcctcttgggagaatctggggctgggaaatcaagtcttgcatatgctttggttcatgcgaaagcactaattcacccagaccgtgagccccatagtacagtgggtgtagatttctacacatggagaccagtactagatggtgtagagttccacattgttgattgcgcagggcaacggagataccagttgacccatccattttttctgtcttcagaggcactgcacatcttagttgtggatctcttcaactatcagccagctgaaagctgttttcgcagaactgttggtgattggctagatctggtgacatcacgcatattgaagccacggatcatgattgttccaacacatctggataaatttggccacaatgaaagtgatgttgttgtcagccgatgtgaagacatcttggatcgtgtccaacattactgcaagagtcaaaaagcccagatggagtttgagatttctgaaaagaagagaaagggcctcaaaaatcctgtgcaaggagggactgatcctgaatggaaaaagaagaatcccccagttatttcttcttcacttcattccagtgctttgcctgatcagccttctccagaaccaagcaaggacagttacattgctatggtaccggtcagcaacattagtgaactacaagggatcataacactacaagatgagatcatccgcatagctaaagatgggcaactctttccttcagtgggcagagatttaccagaagagtggatcaaacttgaaaaggcattgaaagactgtagagacaatggtggagttcgttgtatgccctatgagcaatttgaaaactttgccaaacagcacaccaacctttctcagatgggactgcgctcagcagtcacctacctggattcgattggagagttacgctattacagtaacatttcatcattacacttcaatgtgttcattgacctccgatggctagctaaattggttaagtgtctttttaggcatgatctggagagaacactgcagtatgatgaaaactttcaaaaatttggagtcatgcttgggttttttgatcaactcaaggaaaaacttttgaaggaagcagtgttgtcacaagatcttttgagatgcctctgggaagaaatcaatctggatgagaacatgtttctgcagatggttgaacttcttcatcatcttgggcttgcatgccgtctgccgtcagcagatcctgatgaaataaatcttttagttccctggttcttgagtgagtatcctgatgcagttgagggtttgtcagacagcctacctgcagaccaggaggagataaatttgctcttcatgatgtcatacttgcctcctggtttgtttgatcggttgcgtgttcgctgctgttcgctcgagtttgaatacttcaactggaaggatcatgtgttgttgtttgcggatgaccatcgagtccttgtacagaagcataattatcccccaggagctgagtcaagctcgccagctatttacatcaaaggaagaggaccaaaggcagaactggaagcactctgggaaattctgctgaggcttgttcaggagacagatgcattgctaacagagtggcagagactgagcatacagcgttgttccttgtgtcccccttgcgcgcagcagaagaaggccaaaccatgtcttttcccatgtaattggatgagccatgctgcactaaatatgcagcgtggtacacagacaaagatgtgcaaaggaaacatgatatttaagggagagaagtttgatgttaacatcatctaccctccagctgaaattgttaaacgattactggagtcgccatatccatcaatgtcagcgccagtttcagaagatgtccctgacatcctcatagcagacctttcccagcaaataaccaaacagtggaagttggtggcagtgtatttgggcttcacaaatgatcatgtcgccacatttgatgcagaaaatgattctgttgctgaaaagataattgccatgttgaattcatggaagcatagccaagcaaaggatgcaacaagaagcaacctgatgaaggcgttgatgaaagctgcgagaaaagatttggctgaaaaagtttgtagctaccaggagtga

Transcript

evm.model.Ap11.1095

ATGGCAGGTGAAATTGAATTTGAAGTCATCAATGTGCCGCCAAAAGAGTTGCCAGTCACAAACGAGAATGGTACCATCACAGTGGATCTGACAGGATATGATCCATTAACCCCAGATGAATTTCCCGATTTCTCCAGTGTGCACGGACTTCAGGATCTTAGATTTTTTTCAAACTATCTGAAAGAGATTCCTGATGGCTTCTGTGAAGCCAATCAGCTACGGACCCTGATCATGAGTTGTAGTCCTATCAAACCAGACAATGGCCTCTTGCGTCTACCAACACAGTTTAACCATTTTTCACAATTGGAAGAGCTGCATCTAGTAGGAAATCATTTTGAGAGCTTCCCCATGCCTATATGTGAGCTGAAAAATGTCAAGAAACTGTACATGGACAACTGCACTCTCACAAAGATTCCAAAAGAAATTGGAAATATGTCAAGTCTTGCCGTAGTAGACTTTAGTTACAATAGTCTCGGTGATCCTGATAGTTTGCCAAAAGAATTTTTTCATTTACCAAATATCAAGGATTTGTACCTGATAGACTGTCAGCTGAATGAGTTGCCTACTGAAATTGGAGAATTAAAGAACTTGGAAGGTCTGAGAATAGGAAAGAATAATCTAACCAGCCTTCCAGATGAATTATTCAATTTGGTGAACCTCAGGAAGCTAAGTGCTGAACGCAACAAGATCTCGGAGCTATCCCCAAAGATTGGCCAGCTCAGCGCTTTGGTATTCCTCTTAATAATGGAGAACAGGCTTACCACTCTGCCTGATGAGATAAAGAATTTAGAAAACTGCATGCATATCAACTTGTTTGATAACAAACTTACATGCCTACCGCGATCCATTATTGACATGCCAGTGCTTGAGTCACTAATCGTTGATGGAAACAACAATCTGCGGAATCCACCACTTGATGTCTGCACGCGTGGTCTGGACAGCATCAGAGGTTATTTTGAATCTCTAGCATCCGTTGACACTCAAGCGGTTCATTCACAGCGTCTGAAAGTGGTCCTCTTGGGAGAATCTGGGGCTGGGAAATCAAGTCTTGCATATGCTTTGGTTCATGCGAAAGCACTAATTCACCCAGACCGTGAGCCCCATAGTACAGTGGGTGTAGATTTCTACACATGGAGACCAGTACTAGATGGTGTAGAGTTCCACATTGTTGATTGCGCAGGGCAACGGAGATACCAGTTGACCCATCCATTTTTTCTGTCTTCAGAGGCACTGCACATCTTAGTTGTGGATCTCTTCAACTATCAGCCAGCTGAAAGCTGTTTTCGCAGAACTGTTGGTGATTGGCTAGATCTGGTGACATCACGCATATTGAAGCCACGGATCATGATTGTTCCAACACATCTGGATAAATTTGGCCACAATGAAAGTGATGTTGTTGTCAGCCGATGTGAAGACATCTTGGATCGTGTCCAACATTACTGCAAGAGTCAAAAAGCCCAGATGGAGTTTGAGATTTCTGAAAAGAAGAGAAAGGGCCTCAAAAATCCTGTGCAAGGAGGGACTGATCCTGAATGGAAAAAGAAGAATCCCCCAGTTATTTCTTCTTCACTTCATTCCAGTGCTTTGCCTGATCAGCCTTCTCCAGAACCAAGCAAGGACAGTTACATTGCTATGGTACCGGTCAGCAACATTAGTGAACTACAAGGGATCATAACACTACAAGATGAGATCATCCGCATAGCTAAAGATGGGCAACTCTTTCCTTCAGTGGGCAGAGATTTACCAGAAGAGTGGATCAAACTTGAAAAGGCATTGAAAGACTGTAGAGACAATGGTGGAGTTCGTTGTATGCCCTATGAGCAATTTGAAAACTTTGCCAAACAGCACACCAACCTTTCTCAGATGGGACTGCGCTCAGCAGTCACCTACCTGGATTCGATTGGAGAGTTACGCTATTACAGTAACATTTCATCATTACACTTCAATGTGTTCATTGACCTCCGATGGCTAGCTAAATTGGTTAAGTGTCTTTTTAGGCATGATCTGGAGAGAACACTGCAGTATGATGAAAACTTTCAAAAATTTGGAGTCATGCTTGGGTTTTTTGATCAACTCAAGGAAAAACTTTTGAAGGAAGCAGTGTTGTCACAAGATCTTTTGAGATGCCTCTGGGAAGAAATCAATCTGGATGAGAACATGTTTCTGCAGATGGTTGAACTTCTTCATCATCTTGGGCTTGCATGCCGTCTGCCGTCAGCAGATCCTGATGAAATAAATCTTTTAGTTCCCTGGTTCTTGAGTGAGTATCCTGATGCAGTTGAGGGTTTGTCAGACAGCCTACCTGCAGACCAGGAGGAGATAAATTTGCTCTTCATGATGTCATACTTGCCTCCTGGTTTGTTTGATCGGTTGCGTGTTCGCTGCTGTTCGCTCGAGTTTGAATACTTCAACTGGAAGGATCATGTGTTGTTGTTTGCGGATGACCATCGAGTCCTTGTACAGAAGCATAATTATCCCCCAGGAGCTGAGTCAAGCTCGCCAGCTATTTACATCAAAGGAAGAGGACCAAAGGCAGAACTGGAAGCACTCTGGGAAATTCTGCTGAGGCTTGTTCAGGAGACAGATGCATTGCTAACAGAGTGGCAGAGACTGAGCATACAGCGTTGTTCCTTGTGTCCCCCTTGCGCGCAGCAGAAGAAGGCCAAACCATGTCTTTTCCCATGTAATTGGATGAGCCATGCTGCACTAAATATGCAGCGTGGTACACAGACAAAGATGTGCAAAGGAAACATGATATTTAAGGGAGAGAAGTTTGATGTTAACATCATCTACCCTCCAGCTGAAATTGTTAAACGATTACTGGAGTCGCCATATCCATCAATGTCAGCGCCAGTTTCAGAAGATGTCCCTGACATCCTCATAGCAGACCTTTCCCAGCAAATAACCAAACAGTGGAAGTTGGTGGCAGTGTATTTGGGCTTCACAAATGATCATGTCGCCACATTTGATGCAGAAAATGATTCTGTTGCTGAAAAGATAATTGCCATGTTGAATTCATGGAAGCATAGCCAAGCAAAGGATGCAACAAGAAGCAACCTGATGAAGGCGTTGATGAAAGCTGCGAGAAAAGATTTGGCTGAAAAAGTTTGTAGCTACCAGGAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0IIG7	Ras-related protein Rab-5A OS=Bos taurus OX=9913 GN=RAB5A PE=1 SV=1
P18066	Ras-related protein Rab-5A OS=Canis lupus familiaris OX=9615 GN=RAB5A PE=1 SV=1
P20339	Ras-related protein Rab-5A OS=Homo sapiens OX=9606 GN=RAB5A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001531 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR020859 all species →	Domain	Roc domain	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050715 all species →	Family	Leucine-rich repeat and signaling effector domain-containing protein	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR025662 all species →	Binding_site	Sigma-54 interaction domain, ATP-binding site 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45752 all species →	LEUCINE-RICH REPEAT-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap11.1095.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.