Gene detail

Detailed information of evm.model.Ap11.1106 in Astrangia poculata

Genomic Location: Ap11:12373874...12407231
NR annotation: XP_020607239.1, importin subunit beta-1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.1106

atggatctcactcaagtcctcgaagcaacagtatcaccagatcaaaatgctatacaagccgctcaaacctatctggagcaagctgctcaagcaaatctgccccagtttttagttgctctcgtgaacgtgttgggcgatgccacgaagtctcaggttgcaagaatggcggctgggttacaactgaaaaatcagctcacatcaaaagacgcttctgtcaggcttcaataccagcaacggtggatggctttggacggcgaagtaaaaagtgttatcagggaaatggcgattcaaactctcggaacagagacagcgaggcctgctattgcaccacagtgtatagcggcaattgcttgtgccgaaatcccacaaaaacagtggatggaagtgatggacattttacaaaacattacagttcaagcaagcagtacagatgcattaaaggagcatgctttggaaacaattggctacatttgccaggatattgaacctgagcatctggtggatgattcacataaaattctcacagcaatagtatcaggaatgagaaaggaagaacctaatgttaacataaggattgcagcaacaaatgccctcctcaactctcttgaatttacaaagcagaattttgaaagagagcaagagcgaaacttcattatgcaagttgtctgtgaagcaacccaaagcactgaaaaccaactcaaagttgcagccttgcagaatcttgtgaagatcatgacgttgtattatcagcatatggaaagctacatgggaaaagcactgtttccaattactattgaagcaatcaaatctccaatggacgaagtatcgctccaagggattgagttctggtcctcagtgtgtgatgaggaaatggacttagcaattgaagctgtggaggccgcagaaactaaaagagaaccagaacagacaagcaagttctatgctaaaggagctctactttatttaacacccctactgctggaatccctcacaagacaggaagagtttgatgatgaggatgactggaatccatgcaaagctgctggtgtttgcctaatgcttttggctcagtgctgtgaaagtgagattctaccatatgtcacagactttataatggaaaatataaaaagtgtggattggaaacgcagagatgctgcggttatggcttttggtgcaatactggaaggacctgaacccactgctttgcagcagtatgctgcattggccacaccaacactcatatccttaatggatgatgactctgtagtagtgcgagattctgtcgcttggacacttggtaggatatgtgagattatacctcaagttgtccttgaaaataaccttgagactctggttgcaactctgttaaatggacttgacacagaaccccgagttgctgctaacatctgctgggcattcaattctctaggagaagcagcgtatgatgctgcagtgtctgacgatgatgatgaaccaccaacatatgcattgtcaaactactttgaaaagatagtggcaaaacttctagaagtcacagatagacctgatgctaaccaaggaaacctcagaagttcagcttatgaggctgttatggaattaattaaaaatagtgcgaaggattgttatcgagttgtacaacaaacaacactagtcattcttcagaggctgcagcatgtgttacagatagagaaaagtgtagcagaccgagcccaatataatgacttgcaatccctcttatgtgcaacacttcagagtgtgctaagaaaagtcaatgagcaagacgcacaacaaattgccagcccgatcatggatgcattacttcagatgcttagcttgggtggcagatcagggagcggagtacaagaagatgcacttatggccataggcacacttgtagaagttgttggagtacactttttgagtttcatgaacgcattcaagccatacttaatagaagcactcagagagcgaggtgaataccaggtgtgcgttgctgctgttggattggtaggagacatagcacgagccttaggattacagatatcagcccattgtgatcattttatgcagattttattggaaaacttggcggatgcgacagtccaccggagcgccaaacctcatatcctttccgtgttcggagatattgctttggccgtaggagctaacttcaagagctactttgaagttgtcatagcaactctaaatcaagcctctgttacgactgtagacaaatctgattatgatatggtggattacctaaacgagctgagagaaggatgtttagaagcctacactggaattattcaaggactgaagggtgaagctaaggaaggaaccattagtgaggatctgaatcttgttaagccgcatattgttcatatcatcaccttcattgaagtcatagctacagatcaagatcactcagagagtaatgtctctagtgcatgcggtcttgtaggtgatatttgttcagcattcggcgcactggttcacccactgctcgagaagcaagccatcaatgaattgctccaagaaggaaggcgatccaaaacacacaagaccaaacaaactgccacttgggcaaccaaggagatgcgcaagctcaaacaacaacagaattaa

Transcript

evm.model.Ap11.1106

ATGGATCTCACTCAAGTCCTCGAAGCAACAGTATCACCAGATCAAAATGCTATACAAGCCGCTCAAACCTATCTGGAGCAAGCTGCTCAAGCAAATCTGCCCCAGTTTTTAGTTGCTCTCGTGAACGTGTTGGGCGATGCCACGAAGTCTCAGGTTGCAAGAATGGCGGCTGGGTTACAACTGAAAAATCAGCTCACATCAAAAGACGCTTCTGTCAGGCTTCAATACCAGCAACGGTGGATGGCTTTGGACGGCGAAGTAAAAAGTGTTATCAGGGAAATGGCGATTCAAACTCTCGGAACAGAGACAGCGAGGCCTGCTATTGCACCACAGTGTATAGCGGCAATTGCTTGTGCCGAAATCCCACAAAAACAGTGGATGGAAGTGATGGACATTTTACAAAACATTACAGTTCAAGCAAGCAGTACAGATGCATTAAAGGAGCATGCTTTGGAAACAATTGGCTACATTTGCCAGGATATTGAACCTGAGCATCTGGTGGATGATTCACATAAAATTCTCACAGCAATAGTATCAGGAATGAGAAAGGAAGAACCTAATGTTAACATAAGGATTGCAGCAACAAATGCCCTCCTCAACTCTCTTGAATTTACAAAGCAGAATTTTGAAAGAGAGCAAGAGCGAAACTTCATTATGCAAGTTGTCTGTGAAGCAACCCAAAGCACTGAAAACCAACTCAAAGTTGCAGCCTTGCAGAATCTTGTGAAGATCATGACGTTGTATTATCAGCATATGGAAAGCTACATGGGAAAAGCACTGTTTCCAATTACTATTGAAGCAATCAAATCTCCAATGGACGAAGTATCGCTCCAAGGGATTGAGTTCTGGTCCTCAGTGTGTGATGAGGAAATGGACTTAGCAATTGAAGCTGTGGAGGCCGCAGAAACTAAAAGAGAACCAGAACAGACAAGCAAGTTCTATGCTAAAGGAGCTCTACTTTATTTAACACCCCTACTGCTGGAATCCCTCACAAGACAGGAAGAGTTTGATGATGAGGATGACTGGAATCCATGCAAAGCTGCTGGTGTTTGCCTAATGCTTTTGGCTCAGTGCTGTGAAAGTGAGATTCTACCATATGTCACAGACTTTATAATGGAAAATATAAAAAGTGTGGATTGGAAACGCAGAGATGCTGCGGTTATGGCTTTTGGTGCAATACTGGAAGGACCTGAACCCACTGCTTTGCAGCAGTATGCTGCATTGGCCACACCAACACTCATATCCTTAATGGATGATGACTCTGTAGTAGTGCGAGATTCTGTCGCTTGGACACTTGGTAGGATATGTGAGATTATACCTCAAGTTGTCCTTGAAAATAACCTTGAGACTCTGGTTGCAACTCTGTTAAATGGACTTGACACAGAACCCCGAGTTGCTGCTAACATCTGCTGGGCATTCAATTCTCTAGGAGAAGCAGCGTATGATGCTGCAGTGTCTGACGATGATGATGAACCACCAACATATGCATTGTCAAACTACTTTGAAAAGATAGTGGCAAAACTTCTAGAAGTCACAGATAGACCTGATGCTAACCAAGGAAACCTCAGAAGTTCAGCTTATGAGGCTGTTATGGAATTAATTAAAAATAGTGCGAAGGATTGTTATCGAGTTGTACAACAAACAACACTAGTCATTCTTCAGAGGCTGCAGCATGTGTTACAGATAGAGAAAAGTGTAGCAGACCGAGCCCAATATAATGACTTGCAATCCCTCTTATGTGCAACACTTCAGAGTGTGCTAAGAAAAGTCAATGAGCAAGACGCACAACAAATTGCCAGCCCGATCATGGATGCATTACTTCAGATGCTTAGCTTGGGTGGCAGATCAGGGAGCGGAGTACAAGAAGATGCACTTATGGCCATAGGCACACTTGTAGAAGTTGTTGGAGTACACTTTTTGAGTTTCATGAACGCATTCAAGCCATACTTAATAGAAGCACTCAGAGAGCGAGGTGAATACCAGGTGTGCGTTGCTGCTGTTGGATTGGTAGGAGACATAGCACGAGCCTTAGGATTACAGATATCAGCCCATTGTGATCATTTTATGCAGATTTTATTGGAAAACTTGGCGGATGCGACAGTCCACCGGAGCGCCAAACCTCATATCCTTTCCGTGTTCGGAGATATTGCTTTGGCCGTAGGAGCTAACTTCAAGAGCTACTTTGAAGTTGTCATAGCAACTCTAAATCAAGCCTCTGTTACGACTGTAGACAAATCTGATTATGATATGGTGGATTACCTAAACGAGCTGAGAGAAGGATGTTTAGAAGCCTACACTGGAATTATTCAAGGACTGAAGGGTGAAGCTAAGGAAGGAACCATTAGTGAGGATCTGAATCTTGTTAAGCCGCATATTGTTCATATCATCACCTTCATTGAAGTCATAGCTACAGATCAAGATCACTCAGAGAGTAATGTCTCTAGTGCATGCGGTCTTGTAGGTGATATTTGTTCAGCATTCGGCGCACTGGTTCACCCACTGCTCGAGAAGCAAGCCATCAATGAATTGCTCCAAGAAGGAAGGCGATCCAAAACACACAAGACCAAACAAACTGCCACTTGGGCAACCAAGGAGATGCGCAAGCTCAAACAACAACAGAATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14974	Importin subunit beta-1 OS=Homo sapiens OX=9606 GN=KPNB1 PE=1 SV=2
P70168	Importin subunit beta-1 OS=Mus musculus OX=10090 GN=Kpnb1 PE=1 SV=2
P52297	Importin subunit beta OS=Xenopus laevis OX=8355 GN=kpnb1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003064 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13513 all species →	HEAT_EZ	HEAT-like repeat	Repeat	Interproscan
PF03810 all species →	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan
IPR040122 all species →	Family	Importin beta family	Interproscan
IPR001494 all species →	Domain	Importin-beta, N-terminal domain	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10527 all species →	IMPORTIN BETA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0061608 all species →	Molecular Function	nuclear import signal receptor activity	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14293	KPNB1, IPO1; importin subunit beta-1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.