Genomic Location: Ap11:12642785...12707823
NR annotation: XP_020607174.1, uncharacterized protein LOC110045891 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap11.1136.1.5f15dd39 |
| Transcript |
| evm.model.Ap11.1136.1.5f15dd39 |
| Protein |
| evm.model.Ap11.1136.1.5f15dd39 |
| UniProt accession | Description |
|---|---|
| P98088 | Mucin-5AC OS=Homo sapiens OX=9606 GN=MUC5AC PE=1 SV=4 |
| O55225 | Otogelin OS=Mus musculus OX=10090 GN=Otog PE=1 SV=3 |
| Q6ZRI0 | Otogelin OS=Homo sapiens OX=9606 GN=OTOG PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000873 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00094 all species → | VWD | von Willebrand factor type D domain | Domain | Interproscan |
| PF08742 all species → | C8 | C8 domain | Domain | Interproscan |
| PF01826 all species → | TIL | Trypsin Inhibitor like cysteine rich domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050780 all species → | Family | Mucin/von Willebrand/Thrombospondin superfamily | Interproscan |
| IPR001007 all species → | Domain | VWFC domain | Interproscan |
| IPR006207 all species → | Domain | Cystine knot, C-terminal | Interproscan |
| IPR002223 all species → | Domain | Pancreatic trypsin inhibitor Kunitz domain | Interproscan |
| IPR001846 all species → | Domain | von Willebrand factor, type D domain | Interproscan |
| IPR014853 all species → | Domain | VWF/SSPO/Zonadhesin-like, cysteine-rich domain | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR020901 all species → | Conserved_site | Proteinase inhibitor I2, Kunitz, conserved site | Interproscan |
| IPR036880 all species → | Homologous_superfamily | Pancreatic trypsin inhibitor Kunitz domain superfamily | Interproscan |
| IPR036084 all species → | Homologous_superfamily | Serine protease inhibitor-like superfamily | Interproscan |
| IPR002919 all species → | Domain | Trypsin Inhibitor-like, cysteine rich domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11339 all species → | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0031012 all species → | Cellular Component | extracellular matrix | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0004867 all species → | Molecular Function | serine-type endopeptidase inhibitor activity | Interproscan |
evm.model.Ap11.1136.1.5f15dd39.Transcript abundance of evm.model.Ap11.1136.1.5f15dd39 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
