Gene detail

Detailed information of evm.model.Ap11.1260 in Astrangia poculata

Genomic Location: Ap11:14142224...14151473
NR annotation: KAJ7392755.1, hypothetical protein OS493_010410 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.1260

atggcgcagcccaagccaagagccgaccataaacgtaaggaaagtattttggatattgcgcacgatttagagcttctatgcctaaacggatatgaggcggatacgagcatggacaagagggaactgtcagaactgcgagaagagaggatacaagagctaatggaaacaaatggaacgctctatgagggatatgaccggattttaaaagatctggagcaaacgcgtgaccgacgacacattttaaaagagtattacgagaaagtgaaggtttttcttgaagaaactgcagcgataagtcggacagaaaaaacggatttcctgtctggagctaaggaatgcattaaagacctcaagaacaagcgatacactgtacttattgctggagagacaagcgccggcaagagcagtcttatcaatctcttattgaatgaccaggtcctgccgacgtgcatcatgcaaaacacacacaccatctgtgaaatatcgtatggacccagaaaagaagccgtgatacacttcactaaacaaagtaaaccttctcgcacgctgacggggagcaagtttgacaggattaaagagtacattgaaatgccagttgaggatgagcccttgtatgagaaaattgagatcaagatacccaacccactgttgaagggtggcgtggtgattgtagacagcccaggtatttgcgattcagagcatgttagcaatatagccttgaaatatttgccacaggcctacgcattcatctacgtcatcaacagtacaaatgctggaggattacaggaggacaggcttttgcgtatcctgaaggaatggagaaaactttacaaaggagagaaacgttgtggtatcactgctgagtctgctctgtttgtctgcaataagtgggacgaagtggaaaaagaaggcaaccaatctgaaaaagaagctctccagaaacacatcattggcaaactcaaagagaggatccccgaacttgatgaaaaatgccaagttattaaaatgtcggtgaagaaagcagataaagtgctaaagaaatttaacgcggtgagagatgatctgaacggcctgattaacggactacaacgtcttctacccatttgtatcgagagaaaaacagaatacttctatggctggattagcggtgcactcggcaacttatcggatgatttgaaagctgaaattcgaaatgccaaacgaaacggagaagaaaggatcaaggctcgcgaagaaattgaagagaaactcgaaaagcttaaacaaggtattcccattcgagacattgaagtcgcaatatccaatcatgtcgaacacattcgtgtaaagatgacatctcacttgcaatcagatgacgtaaggagtaggttctgtacttggtcagacaaggacttgcctaacattgacgatcgtcataaaacaaatgccataaagatcaaggagatctgcagtaagtgcattgaggaacgattccaatctttgcttgagaactgggaaatcagaggaaagctttttacgaaagcacacgaagatctcgagagtcgattccaccaaggtttctgcgattttgagaaagacatccgtgacattgatcgtgtgctcgttggtgaatcgggggacgagtttatgccttttgaggttcgtcctggcaggctgtgttcgccctcagatccaagaatgaagaaattcctagtgttgactgtaggaatcttcatgccaattttgtttcccgttggcctggcggcgggagttctttctgcaccggtgttcggttacctggtcattgaaaagcaccttaaggaactgaagttaaaaaacaattccatgcaagccctaacagaactgtccagagagtatctcgacgctttcattaaccacgaagttctcaatcacgtccgggaaaaattctcggaggagacgaatcatattgccaacatcaagagatgccatcaacagcttatttccaaatatgagcagagatgcaaggatctcacaagaagtgaagatgaagcaaggaataaagaaactctggaaaagtacggtccgtttcatggggagctacaagaaatgaaccaaatgctgatgtttgatgccattcaaaatggaatacaggtgatgtcttgccaaattgatgtcagacgacttcgttacaacgagggagacagtcttggtggaggcacctacggtgcagtctttagaggaaaactcacccagcccgggcatggaagaaaagatgttgctgtcaaaaagcttcgagaagctccacatccatcaaacgtggccacatttcttcgagaggcagacatgttaaagcaactggagcacaagcacatagttgcgttctatggagtggccatgaacgttcataatcacaaactgctttccttggagctggtctttgacttgtgcactggaagtctcaagaaccacatcttcaaaaacgacaaatatattccgtggaagactgcgagcgcggtggccaacacattacaatggaccaagcagatcttagatgcgctggagtttattcacagcaagaacgttattcatcgagatctcaagctggacaacgttctaatttcacgacgcgagcacatcaaactggcagaccttggcttggccaactttaattacagagtcacgggaaccgtatgtgggtcacccctctacatggcacctgaagtatttgaaggcaaatcgtactgtaccaaggtggatatgtacagcttcggtctcatcatgtgggagatgtggtacggcaaaagagtcttctccgaactaagcaaaagcgaattccttcgaaggattatagaggagaaatatcggcctcaggcccccatacgagatgggagatttgtacccaatcctcctccagcagagtggagcgagctcatggaatcctgttggcaagccgaaccaagtctgagacggacagcgacagaatgtaaagaattaattaaggaaattaaatatcaatatgtgaagtag

Transcript

evm.model.Ap11.1260

ATGGCGCAGCCCAAGCCAAGAGCCGACCATAAACGTAAGGAAAGTATTTTGGATATTGCGCACGATTTAGAGCTTCTATGCCTAAACGGATATGAGGCGGATACGAGCATGGACAAGAGGGAACTGTCAGAACTGCGAGAAGAGAGGATACAAGAGCTAATGGAAACAAATGGAACGCTCTATGAGGGATATGACCGGATTTTAAAAGATCTGGAGCAAACGCGTGACCGACGACACATTTTAAAAGAGTATTACGAGAAAGTGAAGGTTTTTCTTGAAGAAACTGCAGCGATAAGTCGGACAGAAAAAACGGATTTCCTGTCTGGAGCTAAGGAATGCATTAAAGACCTCAAGAACAAGCGATACACTGTACTTATTGCTGGAGAGACAAGCGCCGGCAAGAGCAGTCTTATCAATCTCTTATTGAATGACCAGGTCCTGCCGACGTGCATCATGCAAAACACACACACCATCTGTGAAATATCGTATGGACCCAGAAAAGAAGCCGTGATACACTTCACTAAACAAAGTAAACCTTCTCGCACGCTGACGGGGAGCAAGTTTGACAGGATTAAAGAGTACATTGAAATGCCAGTTGAGGATGAGCCCTTGTATGAGAAAATTGAGATCAAGATACCCAACCCACTGTTGAAGGGTGGCGTGGTGATTGTAGACAGCCCAGGTATTTGCGATTCAGAGCATGTTAGCAATATAGCCTTGAAATATTTGCCACAGGCCTACGCATTCATCTACGTCATCAACAGTACAAATGCTGGAGGATTACAGGAGGACAGGCTTTTGCGTATCCTGAAGGAATGGAGAAAACTTTACAAAGGAGAGAAACGTTGTGGTATCACTGCTGAGTCTGCTCTGTTTGTCTGCAATAAGTGGGACGAAGTGGAAAAAGAAGGCAACCAATCTGAAAAAGAAGCTCTCCAGAAACACATCATTGGCAAACTCAAAGAGAGGATCCCCGAACTTGATGAAAAATGCCAAGTTATTAAAATGTCGGTGAAGAAAGCAGATAAAGTGCTAAAGAAATTTAACGCGGTGAGAGATGATCTGAACGGCCTGATTAACGGACTACAACGTCTTCTACCCATTTGTATCGAGAGAAAAACAGAATACTTCTATGGCTGGATTAGCGGTGCACTCGGCAACTTATCGGATGATTTGAAAGCTGAAATTCGAAATGCCAAACGAAACGGAGAAGAAAGGATCAAGGCTCGCGAAGAAATTGAAGAGAAACTCGAAAAGCTTAAACAAGGTATTCCCATTCGAGACATTGAAGTCGCAATATCCAATCATGTCGAACACATTCGTGTAAAGATGACATCTCACTTGCAATCAGATGACGTAAGGAGTAGGTTCTGTACTTGGTCAGACAAGGACTTGCCTAACATTGACGATCGTCATAAAACAAATGCCATAAAGATCAAGGAGATCTGCAGTAAGTGCATTGAGGAACGATTCCAATCTTTGCTTGAGAACTGGGAAATCAGAGGAAAGCTTTTTACGAAAGCACACGAAGATCTCGAGAGTCGATTCCACCAAGGTTTCTGCGATTTTGAGAAAGACATCCGTGACATTGATCGTGTGCTCGTTGGTGAATCGGGGGACGAGTTTATGCCTTTTGAGGTTCGTCCTGGCAGGCTGTGTTCGCCCTCAGATCCAAGAATGAAGAAATTCCTAGTGTTGACTGTAGGAATCTTCATGCCAATTTTGTTTCCCGTTGGCCTGGCGGCGGGAGTTCTTTCTGCACCGGTGTTCGGTTACCTGGTCATTGAAAAGCACCTTAAGGAACTGAAGTTAAAAAACAATTCCATGCAAGCCCTAACAGAACTGTCCAGAGAGTATCTCGACGCTTTCATTAACCACGAAGTTCTCAATCACGTCCGGGAAAAATTCTCGGAGGAGACGAATCATATTGCCAACATCAAGAGATGCCATCAACAGCTTATTTCCAAATATGAGCAGAGATGCAAGGATCTCACAAGAAGTGAAGATGAAGCAAGGAATAAAGAAACTCTGGAAAAGTACGGTCCGTTTCATGGGGAGCTACAAGAAATGAACCAAATGCTGATGTTTGATGCCATTCAAAATGGAATACAGGTGATGTCTTGCCAAATTGATGTCAGACGACTTCGTTACAACGAGGGAGACAGTCTTGGTGGAGGCACCTACGGTGCAGTCTTTAGAGGAAAACTCACCCAGCCCGGGCATGGAAGAAAAGATGTTGCTGTCAAAAAGCTTCGAGAAGCTCCACATCCATCAAACGTGGCCACATTTCTTCGAGAGGCAGACATGTTAAAGCAACTGGAGCACAAGCACATAGTTGCGTTCTATGGAGTGGCCATGAACGTTCATAATCACAAACTGCTTTCCTTGGAGCTGGTCTTTGACTTGTGCACTGGAAGTCTCAAGAACCACATCTTCAAAAACGACAAATATATTCCGTGGAAGACTGCGAGCGCGGTGGCCAACACATTACAATGGACCAAGCAGATCTTAGATGCGCTGGAGTTTATTCACAGCAAGAACGTTATTCATCGAGATCTCAAGCTGGACAACGTTCTAATTTCACGACGCGAGCACATCAAACTGGCAGACCTTGGCTTGGCCAACTTTAATTACAGAGTCACGGGAACCGTATGTGGGTCACCCCTCTACATGGCACCTGAAGTATTTGAAGGCAAATCGTACTGTACCAAGGTGGATATGTACAGCTTCGGTCTCATCATGTGGGAGATGTGGTACGGCAAAAGAGTCTTCTCCGAACTAAGCAAAAGCGAATTCCTTCGAAGGATTATAGAGGAGAAATATCGGCCTCAGGCCCCCATACGAGATGGGAGATTTGTACCCAATCCTCCTCCAGCAGAGTGGAGCGAGCTCATGGAATCCTGTTGGCAAGCCGAACCAAGTCTGAGACGGACAGCGACAGAATGTAAAGAATTAATTAAGGAAATTAAATATCAATATGTGAAGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A2R6XIK6	RAF-like serine/threonine-protein kinase PRAF OS=Marchantia polymorpha OX=3197 GN=PRAF PE=1 SV=1
Q7T6Y2	Putative serine/threonine-protein kinase/receptor R831 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R831 PE=3 SV=2
Q9SAJ2	RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003068 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00350 all species →	Dynamin_N	Dynamin family	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR045063 all species →	Domain	Dynamin, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR26392 all species →	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16288	DSTYK, RIPK5; dual serine/threonine and tyrosine protein kinase	EC:2.7.12.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.