Gene detail

Detailed information of evm.model.Ap11.1287 in Astrangia poculata

Genomic Location: Ap11:14443782...14458071
NR annotation: XP_027060588.1, REST corepressor 3-like isoform X3 [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P2K3	REST corepressor 3 OS=Homo sapiens OX=9606 GN=RCOR3 PE=1 SV=2
Q6P116	REST corepressor 2 OS=Danio rerio OX=7955 GN=rcor2 PE=2 SV=1
Q90WN5	REST corepressor 1 OS=Xenopus laevis OX=8355 GN=rcor1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003344 (this species only)
Transcription factor family	MYB · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01448 all species →	ELM2	ELM2 domain	Family	Interproscan
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF20878 all species →	REST_helical	Helical region in REST corepressor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017884 all species →	Domain	SANT domain	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR000949 all species →	Domain	ELM2 domain	Interproscan
IPR049048 all species →	Domain	REST corepressor, helical domain	Interproscan
IPR051066 all species →	Family	Transcriptional Regulator and Corepressor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16089 all species →	REST COREPRESSOR COREST PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000118 all species →	Cellular Component	histone deacetylase complex	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26242	RCOR2_3; REST corepressor 2/3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.